View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19558_low_7 (Length: 302)
Name: NF19558_low_7
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19558_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 16352605 - 16352733
Alignment:
| Q |
157 |
aaaacgaataaaaactaacaattcaaaatcataaacgaatattacactatctggattcagaataacaatcaattagacgcataaaaccacgcattgttat |
256 |
Q |
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| T |
16352605 |
aaaacaaataaaaactatcaattcaaaatcataaacgaatatcacactatctggattcagaataacaatcaatcagacacataaaaccacgcattattat |
16352704 |
T |
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| Q |
257 |
ctaatgatcctatttaatcgcatacgtac |
285 |
Q |
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| T |
16352705 |
ctaatgatcctatgtaatcgcatacgtac |
16352733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 16352494 - 16352538
Alignment:
| Q |
114 |
ggccatgaaattgagtttatattacaattacaatctgaaaacaaa |
158 |
Q |
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| T |
16352494 |
ggccatgaaattgagtttatattacaattacaatccgaaaacaaa |
16352538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 4786625 - 4786561
Alignment:
| Q |
181 |
aaaatcataaacgaatattacactatctggattcagaataacaatcaattagacgcataaaacca |
245 |
Q |
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| T |
4786625 |
aaaaacatacacgactatcacactatccggattcagaataaaaatcaatcagacacataaaacca |
4786561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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