View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19559_high_2 (Length: 429)
Name: NF19559_high_2
Description: NF19559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19559_high_2 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 231 - 414
Target Start/End: Original strand, 16772417 - 16772600
Alignment:
| Q |
231 |
tatacagaagaccccacttaaaattaaatctcaatctaggtcacacaatataaatcatgcttgcaaatgggaaatgatatgtacagggaaggaagggata |
330 |
Q |
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| T |
16772417 |
tatacagacgacctcatttaaaattaaatctcaatctaggtcacacaatataaatcatgcttgcaaatgggaaatgatatgtacagggaaggaagggata |
16772516 |
T |
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| Q |
331 |
gcgagagtttcacgagagtgcaactgttgaataaatttcctattttcagccatcaccctaatgatttgtggacaagtaggtttt |
414 |
Q |
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| T |
16772517 |
gcgagagtttcacgagagtgcaactgttgaataaatttcctattttcagcaatcaccccaatgatttgtggacaagcaggtttt |
16772600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 16772187 - 16772352
Alignment:
| Q |
1 |
gagagttggggtagcatcaataatagagaatatggtggaaacttgacttatatgattttgatatgtatagagaagatcaatagattttataatgagagta |
100 |
Q |
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| T |
16772187 |
gagagttggggtagcatcaatagtagagaatatggtggaaacttgacttatatgattttgatatgtatagagaagatcaatagattttataatgagagta |
16772286 |
T |
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| Q |
101 |
gattagatttgtgatagtcagataactagagaccgaagaagagttacaaaaattataagagaaact |
166 |
Q |
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| T |
16772287 |
gattagatttgtgatagtcagataactagagaccgaagaagagttaaaaaaattataagagaaact |
16772352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 16779676 - 16779808
Alignment:
| Q |
1 |
gagagttggggtagcatcaataatagagaatatggtggaaacttgacttatatgattttgatatgtatagagaagatcaatagat--ttta-taatgaga |
97 |
Q |
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| T |
16779676 |
gagagttgggctaacatcaatagtcgaaaagatggtggaaaattgaattatatgatttggatatggatagagaagatcggtagattatttagtaaggaga |
16779775 |
T |
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| Q |
98 |
gtagattagatttgtgatagtcagataactaga |
130 |
Q |
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| T |
16779776 |
gttgattagatttgtgatagtcaattaactaga |
16779808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 406
Target Start/End: Original strand, 11823 - 11930
Alignment:
| Q |
301 |
gaaatgatatgtacagggaaggaa-gggatagcgagagtttcacgagagtgcaactgttgaataaatttcctat-tttcagccatcaccctaatgatttg |
398 |
Q |
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||||||||||||| || |||||| |||||||||||| |||||||| ||| | | |||||||| ||||||||| ||||| |||||| | |||||||| |
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| T |
11823 |
gaaatgatatgtatagcaaaggaatgggatagcgagaatttcacgaccgtgtagcggttgaatacatttcctatatttcacccatcattcccatgatttg |
11922 |
T |
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| Q |
399 |
tggacaag |
406 |
Q |
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| T |
11923 |
tggacaag |
11930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 406
Target Start/End: Original strand, 13130 - 13237
Alignment:
| Q |
301 |
gaaatgatatgtacagggaaggaa-gggatagcgagagtttcacgagagtgcaactgttgaataaatttcctat-tttcagccatcaccctaatgatttg |
398 |
Q |
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||||||||||||| || |||||| |||||||||||| |||||||| ||| | | |||||||| ||||||||| ||||| |||||| | |||||||| |
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| T |
13130 |
gaaatgatatgtatagcaaaggaatgggatagcgagaatttcacgaccgtgtagcggttgaatacatttcctatatttcacccatcattcccatgatttg |
13229 |
T |
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| Q |
399 |
tggacaag |
406 |
Q |
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| T |
13230 |
tggacaag |
13237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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