View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19559_low_3 (Length: 397)
Name: NF19559_low_3
Description: NF19559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19559_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 118 - 367
Target Start/End: Original strand, 22996503 - 22996749
Alignment:
| Q |
118 |
atagctctatttcattttaacgagatggtttgaatcttagatcagctgcattacatgatatgcattgaaatttttagcacatttattctcttatgagtca |
217 |
Q |
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| T |
22996503 |
atagctctatttcattttaacgagacggtttgaatcttagatcagctgcattacatgatatg--ttgaaatttttatcacaattattctctt--gagtca |
22996598 |
T |
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| Q |
218 |
tcatctgaataagttatttgaatttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattg |
317 |
Q |
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| T |
22996599 |
tcatctatataagttatttggatttttagcatataggacagtacactagcgagtttatattcattattaactcctctcacatcagatttattttgtaatg |
22996698 |
T |
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| Q |
318 |
ttaataacttttgctttgttatgttgataaaatgactag-atttactcttt |
367 |
Q |
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| T |
22996699 |
ttaataacttttgctttgttatgttgataaaatgactagaatttactcttt |
22996749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 923980 - 924096
Alignment:
| Q |
271 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactagatttactctttaac |
370 |
Q |
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| T |
923980 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactggatttactctttaac |
924079 |
T |
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| Q |
371 |
ctaattctttgcctatg |
387 |
Q |
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| T |
924080 |
ctaattctttgcctatg |
924096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 22964946 - 22964799
Alignment:
| Q |
239 |
atttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgtta |
338 |
Q |
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| T |
22964946 |
atttttagcatataggacagtacactagcgagtttatattcattattaactcctctcatatcaaatttatttcgtaatgttaataac-tttgctttgtta |
22964848 |
T |
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| Q |
339 |
tgttgataaaatgactag-atttactctttaacctaattctttgcctat |
386 |
Q |
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| T |
22964847 |
tgttgataaaataactagaatatactcttttgactgattctttgcctat |
22964799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 10526611 - 10526524
Alignment:
| Q |
18 |
acctgttgcagcttttttccaatgggatgagggaatcagaactgagacatgtcactcttaggattaatgcctctggtataaacattga |
105 |
Q |
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| T |
10526611 |
accttttgcagcttttttcgaatgggatgagggaatcggaactgagacatgtcacccttagaattaatgcctctggtataaacattga |
10526524 |
T |
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