View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19559_low_4 (Length: 327)
Name: NF19559_low_4
Description: NF19559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19559_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 54198863 - 54198566
Alignment:
| Q |
14 |
tactgcagatacttattctcagtttacttgaaacttaattaagaccaaaagatgaatggatcaatattattgaactttatattatacaggtatacctttt |
113 |
Q |
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| T |
54198863 |
tactgcagatacttattctcagtttacttgaaacttaattaagaccaaaagatgaatggatcaatattattgaactttatattatacaggtatacctttt |
54198764 |
T |
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| Q |
114 |
caagtttatggattccatgttcaattaatactgagatgatgacgaacactgcgcagacagcagcaacagcccaagttggtgtttccttcaatgttctttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54198763 |
caagtttatggattccatgttcaattaatactgagatgatgacgaacactgcgcagacagcagcaacagcccaagttggtgtttccttcaatgttctttc |
54198664 |
T |
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| Q |
214 |
cccaggagctcctccggccatcttaatttgctttcttctttcaaacaacaatgtgtacgtttttctagtcagtctatagtgtagtttatattaatatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54198663 |
cccaggagctcctccggccatcttaatttgctttcttctttcaaacaacaatgtgtacgtttttctagtcagtctatagtgtagtttatattaatatt |
54198566 |
T |
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