View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19559_low_5 (Length: 284)
Name: NF19559_low_5
Description: NF19559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19559_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 4507468 - 4507212
Alignment:
| Q |
12 |
acagaaacagttgagtccaaaccaggatcaaatactttgctagcttatgatggcatttcagtttttacgaaggttttggagaaaatgaatactaatttta |
111 |
Q |
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| T |
4507468 |
acagaaacagttgagtccaaaccaggatcaaatactttgctagcttatgatggcatttcagtttttacgaaggctttggagaaaatgaatactaatttta |
4507369 |
T |
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| Q |
112 |
gtagctcaaagacgttgttggaggaaatgttatcttccaatttcaatggtttaagtggtaatataagattcaaagaaagacaactatcctatactccaat |
211 |
Q |
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| T |
4507368 |
gtagctcaaagacgttgttggaggaaatgttatcttccaatttcaatggtttaagtggtaatataaaattcaaagaaagacaactatcctatactccaat |
4507269 |
T |
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| Q |
212 |
gttagaagtttttaaagtgatgaataatgccaagaaacattttgagtttgactcttg |
268 |
Q |
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| T |
4507268 |
gttagaagtttttaaagtgatgaataatgccaagaaacattttgagtttgactcttg |
4507212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 4494660 - 4494415
Alignment:
| Q |
11 |
cacagaaacagttgagtccaaaccaggatcaaatactttgctagcttatgatggcatttcagtttttacgaaggttttggagaaaatgaatactaatttt |
110 |
Q |
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|||| ||||||| |||||||||||||||| |||| ||||||||||||||||| ||||| || || |||| |||| ||||||||||||||||| ||||| |
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| T |
4494660 |
cacaaaaacagtcgagtccaaaccaggattaaatgctttgctagcttatgatagcattacaattgttacaaaggctttggagaaaatgaatagtaattca |
4494561 |
T |
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| Q |
111 |
agtagctcaaagacgttgttggaggaaatgttatcttccaatttcaatggtttaagtggtaatataagattcaaagaaagacaactatcctatactccaa |
210 |
Q |
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| T |
4494560 |
agtagctcaaagatgttattggaggaaatgttatcttcaaatttcaatggcttaatcggcgatataaaattcaaagaaggaaaactatcctacactccaa |
4494461 |
T |
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| Q |
211 |
tgttagaagtttttaaagtgatgaataatgccaagaaacattttga |
256 |
Q |
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| T |
4494460 |
tactaagagtcataaaagtgattaataatgataagaaacatattga |
4494415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 4500228 - 4499988
Alignment:
| Q |
11 |
cacagaaacagttgagtccaaaccaggatcaaatactttgctagcttatgatggcatttcagtttttacgaaggttttggagaaaatgaatactaatttt |
110 |
Q |
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|||| |||||||||||||||||| |||||||||| | | |||||||||||| ||||| | || |||| |||| ||||||||||||||||||||||| | |
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| T |
4500228 |
cacaaaaacagttgagtccaaactaggatcaaatgttcttctagcttatgatagcattaaaattgttacaaaggctttggagaaaatgaatactaattct |
4500129 |
T |
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| Q |
111 |
agtagctcaaagacgttgttggaggaaatgttatcttccaatttcaatggtttaagtggtaatataagattcaaagaaagacaactatcctatactccaa |
210 |
Q |
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||||||||||||| ||| |||||||||||||||||| | ||||||||||| |||| |||| |||||||||||||| || || ||||||||| | ||||| |
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| T |
4500128 |
agtagctcaaagatgttattggaggaaatgttatctgcaaatttcaatggcttaattggtgatataagattcaaaaaaggaatactatcctacattccaa |
4500029 |
T |
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| Q |
211 |
tgttagaagtttttaaagtgatgaataatgccaagaaacat |
251 |
Q |
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||||| ||| |||||||| | |||||| |||||||||| |
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| T |
4500028 |
tgttaagagtcattaaagtggttgataatgacaagaaacat |
4499988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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