View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1955R-Insertion-1 (Length: 1016)
Name: NF1955R-Insertion-1
Description: NF1955R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955R-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 874 - 950
Target Start/End: Original strand, 32769388 - 32769464
Alignment:
| Q |
874 |
ttagatcatatgaaaatgaaagtcaggaattatatctagactttgatgcattgaggtgtgttagagatggtcagtcc |
950 |
Q |
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| T |
32769388 |
ttagatcatatgaaaatgaaagtcaggaattatatatagactttgatgcattgaggtgtgttggagatggtcagtcc |
32769464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 543 - 681
Target Start/End: Original strand, 32769267 - 32769386
Alignment:
| Q |
543 |
agtttgtcaccatgcataaaatcatcgattttgaagtcaaaacaacaatggaaataatgttgttaaaagaaattcaattattgtcttagaaatgactaaa |
642 |
Q |
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| T |
32769267 |
agtttgtcaccatgcacaaaatcatcgattttgaagtcaaaacaacaatg---------ttgtt----------caattattgtcttggaaatgactaaa |
32769347 |
T |
|
| Q |
643 |
aagcaaaatatctagatttaaattactctcggaatggat |
681 |
Q |
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| T |
32769348 |
aagcaaaatttctagatttaaattactctcggagtggat |
32769386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 36417530 - 36417655
Alignment:
| Q |
134 |
gcaaaggagtccttggtaaaatgaggttggctacagttttggtagcttctatagttgcaattgtcctaaatcctcttctcctgcgtgtattgcatgtgga |
233 |
Q |
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||||||||||||||| ||||| |||||| ||| || || | |||||||||||||||||||||||| |||||| ||| ||| ||| ||| |||||||| |
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| T |
36417530 |
gcaaaggagtccttgataaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtc----atcctcctcttctgtgtgaattacatgtgga |
36417625 |
T |
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| Q |
234 |
agaaaaaatgataaggtatgtgattcattt |
263 |
Q |
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||||||| || | ||||||||||| |||| |
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| T |
36417626 |
agaaaaagagaaagggtatgtgatttattt |
36417655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 36412199 - 36412301
Alignment:
| Q |
134 |
gcaaaggagtccttggtaaaatgaggttggctacagttttggtagcttctatagttgcaattgtcctaaatcctcttctcctgcgtgtattgcatgtgga |
233 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||| || || | |||||||||||||||||||||||| |||||| ||| ||| ||| ||| |||||||| |
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| T |
36412199 |
gcaaaggagtccttgataaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtc----atcctcctcttctgtgtgaattacatgtgga |
36412294 |
T |
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| Q |
234 |
agaaaaa |
240 |
Q |
| |
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||||||| |
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| T |
36412295 |
agaaaaa |
36412301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 36426358 - 36426460
Alignment:
| Q |
134 |
gcaaaggagtccttggtaaaatgaggttggctacagttttggtagcttctatagttgcaattgtcctaaatcctcttctcctgcgtgtattgcatgtgga |
233 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||| || || | |||||||||||||||||||||||| |||||| ||| ||| ||| ||| |||||||| |
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| T |
36426358 |
gcaaaggagtccttggcaaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtc----atcctcctcttctgtgtgaattacatgtgga |
36426453 |
T |
|
| Q |
234 |
agaaaaa |
240 |
Q |
| |
|
||||||| |
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|
| T |
36426454 |
agaaaaa |
36426460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 263
Target Start/End: Original strand, 36388165 - 36388288
Alignment:
| Q |
136 |
aaaggagtccttggtaaaatgaggttggctacagttttggtagcttctatagttgcaattgtcctaaatcctcttctcctgcgtgtattgcatgtggaag |
235 |
Q |
| |
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|||||||| |||| ||||| |||||||||| || || | |||||||||||| |||||||||||| ||||| ||||||| ||| | | |||||||||| |
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| T |
36388165 |
aaaggagttcttgataaaaagaggttggctgcaattcttgtagcttctataattgcaattgtcc----tcctcctctcctgtgtgaactacatgtggaag |
36388260 |
T |
|
| Q |
236 |
aaaaaatgataaggtatgtgattcattt |
263 |
Q |
| |
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|||||| | | ||||||||||| |||| |
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| T |
36388261 |
aaaaaaagggagggtatgtgatttattt |
36388288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 36397942 - 36398067
Alignment:
| Q |
134 |
gcaaaggagtccttggtaaaatgaggttggctacagttttggtagcttctatagttgcaattgtcctaaatcctcttctcctgcgtgtattgcatgtgga |
233 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| | || |||||| ||| ||||||||||| ||| || ||| |||| || ||| ||| |||||||| |
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| T |
36397942 |
gcaaaggagtccttgataaaaagaggttggctgtaattatggtagtttcaatagttgcaatcgtc----attctcctctcttgtgtgaattacatgtgga |
36398037 |
T |
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| Q |
234 |
agaaaaaatgataaggtatgtgattcattt |
263 |
Q |
| |
|
|||||||| || | ||||||||||| |||| |
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| T |
36398038 |
agaaaaaaagaaagggtatgtgattgattt |
36398067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 36404877 - 36404980
Alignment:
| Q |
134 |
gcaaaggagtccttggtaaaatgaggttggctacagttttggtagcttctatagttgcaattgtcctaaatcctcttctcctgcgtgtattgcatgtgga |
233 |
Q |
| |
|
||||||||| |||| |||| |||||||||| || || ||||||||||||| |||||||||||| |||||| ||||||| || ||| |||||||| |
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| T |
36404877 |
gcaaaggagcacttgacaaaaagaggttggctgcaattctggtagcttctattgttgcaattgtc----atcctcctctcctgtgtaaattacatgtgga |
36404972 |
T |
|
| Q |
234 |
agaaaaaa |
241 |
Q |
| |
|
|||||||| |
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|
| T |
36404973 |
agaaaaaa |
36404980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 297
Target Start/End: Original strand, 36374207 - 36374366
Alignment:
| Q |
134 |
gcaaaggagtccttggtaaaatgaggttggctacagttttggtagcttctatagttgcaattgtcctaaatcctcttctcctgcgtgtattgcatgtgga |
233 |
Q |
| |
|
||||||||||||| ||| ||| |||| | || || || |||| ||||||| |||||| |||||||| |||| |||||| |||| ||||| ||||| |
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| T |
36374207 |
gcaaaggagtcctaggtcaaaagaggatttctgcaattctggttgcttctacagttgcgattgtcct----cctcctctcctttgtgttttgcaggtgga |
36374302 |
T |
|
| Q |
234 |
agaaaaaatgataaggtatgtgattcatttcaaaggatgataccccctgttgtctatatttcat |
297 |
Q |
| |
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|||||| | || | ||||||||||||| || |||||| ||| || ||||| | |||||||||| |
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|
| T |
36374303 |
agaaaacaagaaacggtatgtgattcaattttaaggataatatcctctgttctttatatttcat |
36374366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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