View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1955R-Insertion-2 (Length: 595)
Name: NF1955R-Insertion-2
Description: NF1955R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955R-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 7 - 593
Target Start/End: Original strand, 45968476 - 45969063
Alignment:
| Q |
7 |
caaaaccaagcaccacccttcttgtatattgaagtttggacgcataatgaacggttttcaaaaagttttgcggtcaccctcttggagttcttgccattca |
106 |
Q |
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| T |
45968476 |
caaaaccaagcaccacccttcttctatattgaagtttggacgcataatgaacggttttcaaaaagttttgcggtcaccctcttggagtttttgccattca |
45968575 |
T |
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| Q |
107 |
agagcgtttcttggcttaaaagcaacaaaaacagaatgcatatcttctattggtggagtacccttcaaggcacgtgaattctcaaactcttttgagacca |
206 |
Q |
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| T |
45968576 |
agagcgtttcttggtttaaaagcaacaaaaacagaatgcatatcttctattggtggagtatccttcaaggcacgtgaattctcaaactcttttgagacca |
45968675 |
T |
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| Q |
207 |
cacgtgtcttaagaattgacaaagatgataacaagggtggagggaatgaggaagatttgaaggagaagaattgtgatagtttgaagaatgtaattgaggc |
306 |
Q |
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| T |
45968676 |
cacgtgtcttaagaattgacaaagatgataacaagggtggaggggatgaggaagatttgaaggagaagaattgtgatagtttgaagaatgtaattgtggc |
45968775 |
T |
|
| Q |
307 |
-aagaatggtgatgaggaagagacagaggtggaaaaagatgcatggaagttattgcagaaagcgcttgttacatattgtgatacacctgttggaactgtt |
405 |
Q |
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| T |
45968776 |
aaagaatggtgatgaggaagagacagatgtggagaaagatgcatggaagttattgcagaaagcgcttgttacatattgtgatacacctgttggaactgtt |
45968875 |
T |
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| Q |
406 |
gcggcaaatgatgattcggggtcacccttgaattatgatcaggtctttattcgagatttcgtcccttctgctcttgctttcttgcttaaaggagaacatg |
505 |
Q |
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| T |
45968876 |
gcggcaaatgatgattcggggtcacccttgaattatgatcaggtctttattcgagatttcgtcccttctgctcttgctttcttgcttaaaggagaacatg |
45968975 |
T |
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| Q |
506 |
agattgtcaagaactttctccttcacaccttgcaactccaggtaataattatcttcggtgtcttttttgtgtgtatatcttgttaatt |
593 |
Q |
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| T |
45968976 |
agattgtcaagaactttctccttcacaccttgcaactccaggtaataattatcttcggtgtcttttttgtgtgtatattttgttaatt |
45969063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 433 - 551
Target Start/End: Complemental strand, 37654993 - 37654875
Alignment:
| Q |
433 |
ttgaattatgatcaggtctttattcgagatttcgtcccttctgctcttgctttcttgcttaaaggagaacatgagattgtcaagaactttctccttcaca |
532 |
Q |
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| T |
37654993 |
ttgaattatgatcaagtgtttattcgggattttgttccgtcggctcttgcttttttgcttaaaggggatactgagattgttaagtactttcttcttcata |
37654894 |
T |
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| Q |
533 |
ccttgcaactccaggtaat |
551 |
Q |
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| T |
37654893 |
ccttgcaattgcaggtaat |
37654875 |
T |
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Back To:
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