View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1955R-Insertion-3 (Length: 410)
Name: NF1955R-Insertion-3
Description: NF1955R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955R-Insertion-3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 29525984 - 29525588
Alignment:
| Q |
8 |
atcactttgccttactaattgtgtgccttcccaatcaaggttggcagttaattgttttctgttagtgtggttgtaactaacttgtactttggctaatggc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
29525984 |
atcactttgccttactaattgtgtgccttcccaatcaagcttggcagttaattgttttctgttaatgtggttgtaactaacttctactttggctaatggc |
29525885 |
T |
|
| Q |
108 |
tatatataaagtcttaggagggaaaattattcattattaattttcatacctcgagtgctaagaatcagataagattaacagcaagaaatggtaagagtat |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29525884 |
tatatataaagtcttaggagagaaaattattcattattaattttcataccttgagtgctaagaatcagataagattaaccgcaagaaatggtaagagtat |
29525785 |
T |
|
| Q |
208 |
tgattgagggattcatactgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaagctcaattatatatctcagggatgtgggaaaacaatt |
307 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29525784 |
tgattgagggattcatagtgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaaactcaattatatatctcagggatgtgggaaaacaatt |
29525685 |
T |
|
| Q |
308 |
atctgaactttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttattctgtaggaatttatagttttcttgtta |
404 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29525684 |
atctgaattttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttgttctgtaggaatttatagttttcttgtta |
29525588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University