View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1955R-Insertion-5 (Length: 340)
Name: NF1955R-Insertion-5
Description: NF1955R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955R-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 43255454 - 43255774
Alignment:
| Q |
9 |
aattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaaggtggttgagn |
108 |
Q |
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| T |
43255454 |
aattattctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaggatgctaagacaagaaagtgaagaaaaggtggttgagt |
43255553 |
T |
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| Q |
109 |
nnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtca |
208 |
Q |
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| T |
43255554 |
ttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtca |
43255653 |
T |
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| Q |
209 |
agatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaa |
308 |
Q |
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| T |
43255654 |
agatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaa |
43255753 |
T |
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| Q |
309 |
catagctaatcttccattctt |
329 |
Q |
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| T |
43255754 |
cattgctaaccttccattctt |
43255774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 43258725 - 43259040
Alignment:
| Q |
14 |
ttctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaaggtggttgagnnnnnn |
113 |
Q |
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| T |
43258725 |
ttctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaagatgctaagacaagaaagtgaagaaaaggtggttgagtttttt |
43258824 |
T |
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| Q |
114 |
nggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
213 |
Q |
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| T |
43258825 |
tggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
43258924 |
T |
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| Q |
214 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacatag |
313 |
Q |
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| T |
43258925 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacattg |
43259024 |
T |
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| Q |
314 |
ctaatcttccattctt |
329 |
Q |
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| T |
43259025 |
ctaaccttccattctt |
43259040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 167 - 329
Target Start/End: Original strand, 43247615 - 43247777
Alignment:
| Q |
167 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
266 |
Q |
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| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
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| Q |
267 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattctt |
329 |
Q |
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| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattctt |
43247777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
208 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
303 |
Q |
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| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
167 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
221 |
Q |
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| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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