View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1955R-Insertion-6 (Length: 330)
Name: NF1955R-Insertion-6
Description: NF1955R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955R-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 66 - 282
Target Start/End: Original strand, 36901146 - 36901361
Alignment:
| Q |
66 |
tacatatatctattaatcatccaaattgtgttatacaaacatacataattttctgtaatttacatattaatcattcaaaccgtgnnnnnnnnnnnngtta |
165 |
Q |
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| T |
36901146 |
tacatatatctattaatcatccaaattgtgttatacaaacatacataattttctgtaatatacatattaatcattcaaaccgtgttttttttttt-gtta |
36901244 |
T |
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| Q |
166 |
agaaccttaatattatcaaaagttatcggtagtatgttgggattcatatttggtggtggttgaaagctaagaatgctaacttttgttacaatttaaatca |
265 |
Q |
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| T |
36901245 |
agaaccttaatattatcaaaagttatcggtcgtatgttgggattcatatttggtggtggttgaaagctaagaatgctaacttttgttacgatttaaatca |
36901344 |
T |
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| Q |
266 |
ttggtgacttagtccta |
282 |
Q |
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| T |
36901345 |
ttgatgacttagtccta |
36901361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 36900793 - 36900850
Alignment:
| Q |
8 |
aataaacacaattataattttgaatgtcgtttaactataatattc-tggtgttcaaata |
65 |
Q |
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| T |
36900793 |
aataaacacaattataattttgaatgtcg-ttaactataatattcttggtgttcaaata |
36900850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 42813584 - 42813627
Alignment:
| Q |
54 |
ggtgttcaaatatacatatatctattaatcatccaaattgtgtt |
97 |
Q |
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| T |
42813584 |
ggtgttcaaatatacatttatctattaatcatgcaaattgtgtt |
42813627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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