View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1955R-Insertion-8 (Length: 180)
Name: NF1955R-Insertion-8
Description: NF1955R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955R-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 21470755 - 21470616
Alignment:
| Q |
9 |
tatgtttcaaaatatttgctaagcaaacaaatacaagatgaattgcgaaatgttatcttacttgttgagtatcaacttggtctgccttgttcaaaaccac |
108 |
Q |
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| T |
21470755 |
tatgtttcaaaatatttgctaagcaaacaaatacaaaatgaattgtttaatgttatcttacctgttgagtatcaacttggtctgccttgtttaaaaccac |
21470656 |
T |
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| Q |
109 |
tctaattttatcatcatgccccttgagggatgttatcaca |
148 |
Q |
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| T |
21470655 |
tctaattttatcatcatgccccttgagggatgttatcaca |
21470616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 21500646 - 21500507
Alignment:
| Q |
9 |
tatgtttcaaaatatttgctaagcaaacaaatacaagatgaattgcgaaatgttatcttacttgttgagtatcaacttggtctgccttgttcaaaaccac |
108 |
Q |
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| T |
21500646 |
tatgtttcaaaaatattgctaggccaacaaatagaagattaattgcttaatgttatcttacttgttgagtatcaacttggtctgccttgttcaaaaccac |
21500547 |
T |
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| Q |
109 |
tctaattttatcatcatgccccttgagggatgttatcaca |
148 |
Q |
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| T |
21500546 |
tctaattttatcatcatgcccctttagggatgttatcaca |
21500507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 40922178 - 40922117
Alignment:
| Q |
65 |
cttacttgttgagtatcaacttggtctgccttgttcaaaaccactctaattttatcatcatg |
126 |
Q |
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| T |
40922178 |
cttacttgctgagtatcaacttgatctgccttgttcaaaaccactcgaattttgtcatcatg |
40922117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 8959758 - 8959717
Alignment:
| Q |
67 |
tacttgttgagtatcaacttggtctgccttgttcaaaaccac |
108 |
Q |
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| T |
8959758 |
tacttgttgagtatcaacttggtctgacttattcaaaaccac |
8959717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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