View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1955_high_1_N (Length: 453)
Name: NF1955_high_1_N
Description: NF1955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 24 - 440
Target Start/End: Original strand, 701191 - 701607
Alignment:
| Q |
24 |
gcataagattgttatttttcttttgtaagtttgttgctaactataatagctccttttttggtatttaaaaaatgcataagctgtgttaagaaataaagtg |
123 |
Q |
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|||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
701191 |
gcatgagattgttatttttattttgtaagtctgttgctaactataatagctccttttttgttatttaaagaatgcataatttgtgttaagaaataaagtg |
701290 |
T |
|
| Q |
124 |
atgttgtggtaagatggtgaaactgtgaaatatgattccatgactatgactaagttaaactttcttatactatccagtgtgcagattaaactactttttt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
701291 |
atgttgtggtaagatggtgaaactgtgaaatatgattcgatgactatgagtgtgataaactttcatatactatccagtgtgcagattaaactactttttt |
701390 |
T |
|
| Q |
224 |
gcatgtaaatataaacactatatagtataacttttgcttttacttatgtgccggtattgttcatcgttcttctagcctctgttactttaattttcattac |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
701391 |
gcatgtaaatataaacactatatagtataacttttgcttttacttatgtgccggtattattcatcgttcttctagcctccgttactttaattttcattac |
701490 |
T |
|
| Q |
324 |
tagaattttttatttctcatttccaggtcaagctattgtgtacagtgaacccgagaggcttgtgatgtcaagatctggtgatgaatgtgttgttgctttg |
423 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
701491 |
tagaattatttatttctcatttccaggtcaagctattgtgtacagtgaacccgagaggccggtgatgtcaagatctggtgatgaatgtgttgttgctttg |
701590 |
T |
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| Q |
424 |
acagatgagtggtatat |
440 |
Q |
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| T |
701591 |
acagatcagtggtatat |
701607 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 442
Target Start/End: Complemental strand, 23258729 - 23258645
Alignment:
| Q |
358 |
attgtgtacagtgaacccgagaggcttgtgatgtcaagatctggtgatgaatgtgttgttgctttgacagatgagtggtatatta |
442 |
Q |
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|||||||||||||| || |||| | |||||||| ||||||||||||||||||||||| ||| |||||||| ||||||| |||| |
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| T |
23258729 |
attgtgtacagtgagccagagaagagggtgatgtctagatctggtgatgaatgtgttgtagctctgacagatcagtggtacatta |
23258645 |
T |
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