View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1955_low_1 (Length: 728)
Name: NF1955_low_1
Description: NF1955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 669; Significance: 0; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 6 - 711
Target Start/End: Complemental strand, 3300222 - 3299509
Alignment:
| Q |
6 |
agtgagaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgc |
97 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3300222 |
agtgaaaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgc |
3300123 |
T |
|
| Q |
98 |
cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300122 |
cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg |
3300023 |
T |
|
| Q |
198 |
aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300022 |
aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat |
3299923 |
T |
|
| Q |
298 |
agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299922 |
agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa |
3299823 |
T |
|
| Q |
398 |
atggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299822 |
atggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattc |
3299723 |
T |
|
| Q |
498 |
ccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctcca |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299722 |
ccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctcca |
3299623 |
T |
|
| Q |
598 |
gaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctt |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299622 |
gaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctt |
3299523 |
T |
|
| Q |
698 |
tcacacgagcaacc |
711 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3299522 |
tcacacgagcaacc |
3299509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 6 - 711
Target Start/End: Complemental strand, 3393115 - 3392402
Alignment:
| Q |
6 |
agtgagaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgc |
97 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3393115 |
agtgaaaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgc |
3393016 |
T |
|
| Q |
98 |
cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3393015 |
cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg |
3392916 |
T |
|
| Q |
198 |
aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392915 |
aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat |
3392816 |
T |
|
| Q |
298 |
agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392815 |
agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa |
3392716 |
T |
|
| Q |
398 |
atggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392715 |
atggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattc |
3392616 |
T |
|
| Q |
498 |
ccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctcca |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392615 |
ccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctcca |
3392516 |
T |
|
| Q |
598 |
gaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctt |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392515 |
gaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctt |
3392416 |
T |
|
| Q |
698 |
tcacacgagcaacc |
711 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3392415 |
tcacacgagcaacc |
3392402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 228 - 568
Target Start/End: Original strand, 1163333 - 1163676
Alignment:
| Q |
228 |
aaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtg |
327 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163333 |
aaatataaaaaagctaataaatgaaaagcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagta |
1163432 |
T |
|
| Q |
328 |
gatcatc---catcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggt |
424 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||| |||||||||| ||| | || | || |||||||||||| |||| ||||||||| |
|
|
| T |
1163433 |
gatcatcatccatcaagcaaatcctccaatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggt |
1163532 |
T |
|
| Q |
425 |
agattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactct |
524 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
1163533 |
agattgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactct |
1163632 |
T |
|
| Q |
525 |
accattctcctcttgggcataactaatcttggtgatcaaaatgg |
568 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1163633 |
accattctcctctttagcaaaactaatcttggtaatcaaaatgg |
1163676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 228 - 581
Target Start/End: Complemental strand, 40418758 - 40418404
Alignment:
| Q |
228 |
aaatagaaaaaagctaataaatgaaaagcatcttccttg--ttttg--gttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta |
323 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||| |||||||||| |||||||||| || | ||||||| |||||||||||| ||| |
|
|
| T |
40418758 |
aaatagaaagaacctaataaatgaaaagcatcttccttgatttttgttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagta |
40418659 |
T |
|
| Q |
324 |
agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggattt-gatggttgtgtcaaatggatggcagttggttcgatttcg |
422 |
Q |
| |
|
| | |||||||| |||||||| |||||||||||| ||||||||| || |||||||| || || ||| ||| | || |||||| ||| ||| |
|
|
| T |
40418658 |
actagatcatccgtcaagcaagtcctccaatggaacaaaaggtctggtag-gggggattacgaagggcccatcatatgtgtagcttttggtttgatctcg |
40418560 |
T |
|
| Q |
423 |
gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact |
522 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
40418559 |
gtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaact |
40418460 |
T |
|
| Q |
523 |
ctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
581 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40418459 |
ctaccatt---ctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
40418404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 323 - 568
Target Start/End: Complemental strand, 1850293 - 1850063
Alignment:
| Q |
323 |
aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcg |
422 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| ||||||| |
|
|
| T |
1850293 |
aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcg |
1850194 |
T |
|
| Q |
423 |
gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact |
522 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
1850193 |
gt---------------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataact |
1850109 |
T |
|
| Q |
523 |
ctaccattctcctcttgggcataactaatcttggtgatcaaaatgg |
568 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1850108 |
ctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg |
1850063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 228 - 581
Target Start/End: Complemental strand, 39880297 - 39879941
Alignment:
| Q |
228 |
aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt |
320 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| || | ||||||||| || |||||||||| | ||||||| |||||||||||| |
|
|
| T |
39880297 |
aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaa-aaaacatcaacaaaagtgatttttgtttaagcta |
39880199 |
T |
|
| Q |
321 |
gtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatt-tgatggttgtgtcaaatggatggcagttggttcgatt |
419 |
Q |
| |
|
|||| | |||||||| |||||||| |||||||||||| |||||||||| || |||||||| ||| || ||| ||| | || |||||| ||| |
|
|
| T |
39880198 |
gtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtctggtag-gggggattctgaagggcccatcatatgtgtagcttttggtttgatc |
39880100 |
T |
|
| Q |
420 |
tcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaaca |
519 |
Q |
| |
|
||||||| ||||||| | ||||| ||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39880099 |
tcggtaggctgctcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaaca |
39880000 |
T |
|
| Q |
520 |
actctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
581 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39879999 |
actctaccatt---cacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39879941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 228 - 581
Target Start/End: Complemental strand, 38988180 - 38987826
Alignment:
| Q |
228 |
aaatagaaaaaagctaataaatgaaaagcatcttccttgttt----tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta |
323 |
Q |
| |
|
||||||||| || |||||||||||| |||| |||||||| || | |||||||||| ||||||||||||| | ||||||| |||||||||||| || |
|
|
| T |
38988180 |
aaatagaaagaacctaataaatgaagagcagcttccttgattgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtg |
38988081 |
T |
|
| Q |
324 |
agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcgg |
423 |
Q |
| |
|
| | |||||||| |||||||| ||||||||||||| ||||||||| || |||| | || || |||| ||| | | |||| || |||||||| |
|
|
| T |
38988080 |
actagatcatccgtcaagcaagtcctccaatggatcaaaaggtctggtaggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcgg |
38987981 |
T |
|
| Q |
424 |
tagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactc |
523 |
Q |
| |
|
||| |||| || | |||||| |||| || ||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38987980 |
taggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactc |
38987881 |
T |
|
| Q |
524 |
taccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
581 |
Q |
| |
|
||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38987880 |
taccatt---cacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
38987826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 603 - 710
Target Start/End: Complemental strand, 1850049 - 1849942
Alignment:
| Q |
603 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca |
702 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850049 |
caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca |
1849950 |
T |
|
| Q |
703 |
cgagcaac |
710 |
Q |
| |
|
|||||||| |
|
|
| T |
1849949 |
cgagcaac |
1849942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 600 - 711
Target Start/End: Complemental strand, 40418367 - 40418259
Alignment:
| Q |
600 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
40418367 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc |
40418271 |
T |
|
| Q |
700 |
acacgagcaacc |
711 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40418270 |
acacgagcaacc |
40418259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 228 - 581
Target Start/End: Complemental strand, 39726906 - 39726545
Alignment:
| Q |
228 |
aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt |
320 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| || | ||||||||| ||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
39726906 |
aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagcta |
39726807 |
T |
|
| Q |
321 |
gtaagtgg----atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcg |
416 |
Q |
| |
|
|||| | | ||||||| |||||||| ||||||||||||| ||||||||| || |||| | || || |||| ||| | | |||| || | |
|
|
| T |
39726806 |
gtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttgg |
39726707 |
T |
|
| Q |
417 |
atttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagca |
516 |
Q |
| |
|
|||||||||| |||| || | |||||| |||| || ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39726706 |
atttcggtagggtgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagca |
39726607 |
T |
|
| Q |
517 |
acaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
581 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39726606 |
acaactctaccatt---cacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39726545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 603 - 710
Target Start/End: Original strand, 1163690 - 1163794
Alignment:
| Q |
603 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
1163690 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca |
1163786 |
T |
|
| Q |
703 |
cgagcaac |
710 |
Q |
| |
|
|||||||| |
|
|
| T |
1163787 |
cgagcaac |
1163794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 600 - 711
Target Start/End: Complemental strand, 39879898 - 39879790
Alignment:
| Q |
600 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
39879898 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
39879802 |
T |
|
| Q |
700 |
acacgagcaacc |
711 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39879801 |
acacgagcaacc |
39879790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 600 - 711
Target Start/End: Complemental strand, 38987789 - 38987681
Alignment:
| Q |
600 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
38987789 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
38987693 |
T |
|
| Q |
700 |
acacgagcaacc |
711 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38987692 |
acacgagcaacc |
38987681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 600 - 711
Target Start/End: Complemental strand, 39726502 - 39726394
Alignment:
| Q |
600 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
39726502 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
39726406 |
T |
|
| Q |
700 |
acacgagcaacc |
711 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39726405 |
acacgagcaacc |
39726394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 1163164 - 1163288
Alignment:
| Q |
77 |
ggtgaaatgtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatatcaaa |
167 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1163164 |
ggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaa |
1163259 |
T |
|
| Q |
168 |
cagaaattgcaaattgcaacagagtaagt |
196 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
1163260 |
cagaaattgcaaattgcaacaaagtaagt |
1163288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 453 - 580
Target Start/End: Complemental strand, 39169101 - 39168974
Alignment:
| Q |
453 |
agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaac---tctaccattctcctcttgggcataacta |
549 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| || || | |||||||| |
|
|
| T |
39169101 |
agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcat---cataacta |
39169005 |
T |
|
| Q |
550 |
atcttggtgatcaaaatggcagcaggaaggt |
580 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
|
|
| T |
39169004 |
ctcttggtaatcaaaattgcagcaggaaggt |
39168974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 600 - 711
Target Start/End: Complemental strand, 39168930 - 39168822
Alignment:
| Q |
600 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
699 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| |||||||||||||||||| | ||||||||||| ||||| | |
|
|
| T |
39168930 |
agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc |
39168834 |
T |
|
| Q |
700 |
acacgagcaacc |
711 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39168833 |
acacgagcaacc |
39168822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 600 - 711
Target Start/End: Complemental strand, 39399943 - 39399835
Alignment:
| Q |
600 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
699 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||| || || | |
|
|
| T |
39399943 |
agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc |
39399847 |
T |
|
| Q |
700 |
acacgagcaacc |
711 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39399846 |
acacgagcaacc |
39399835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 1850444 - 1850346
Alignment:
| Q |
142 |
ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac--------tagttgttcttgttatcggaataaata |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1850444 |
ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagtgaaaagaaccttttaagtatttgttcttgttatcggaataaata |
1850346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 39880540 - 39880491
Alignment:
| Q |
36 |
agtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg |
85 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39880540 |
agtgcaacatatggaagacaggaaagtaaatggtagggtgaggtgaaatg |
39880491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 39880405 - 39880327
Alignment:
| Q |
149 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||||||||| || |||||||||| || |||||||| |
|
|
| T |
39880405 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa |
39880327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 40418860 - 40418782
Alignment:
| Q |
149 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||||||||| || |||||||||| || |||||||| |
|
|
| T |
40418860 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa |
40418782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 507
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
| Q |
465 |
tagatcttttaagaagagttgataatcagattcccacttatcc |
507 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
39400084 |
tagatcttctaagaagagttgataatcagattgccacttatcc |
39400042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 38988282 - 38988229
Alignment:
| Q |
149 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
38988282 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag |
38988229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 448 - 581
Target Start/End: Original strand, 25912122 - 25912252
Alignment:
| Q |
448 |
agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataac |
547 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
25912122 |
agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac |
25912218 |
T |
|
| Q |
548 |
taatcttggtgatcaaaatggcagcaggaaggtt |
581 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
25912219 |
taatcttggtgatcaaaatggcagcatgaaggtt |
25912252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 600 - 711
Target Start/End: Original strand, 25912292 - 25912400
Alignment:
| Q |
600 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
699 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
25912292 |
agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc |
25912388 |
T |
|
| Q |
700 |
acacgagcaacc |
711 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25912389 |
acacgagcaacc |
25912400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 606 - 672
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
| Q |
606 |
gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt |
672 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44444772 |
gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt |
44444838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 228 - 372
Target Start/End: Original strand, 44444395 - 44444543
Alignment:
| Q |
228 |
aaatagaaaaaagctaataaatgaaaagcatcttccttg----ttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta |
323 |
Q |
| |
|
||||||||| || ||||||||||||| |||| ||||||| |||| ||||||||| ||||||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
44444395 |
aaatagaaataacctaataaatgaaaggcatattccttgattgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgta |
44444494 |
T |
|
| Q |
324 |
agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttcta |
372 |
Q |
| |
|
| | |||||||| |||||||| ||||| |||||| ||||| ||||||| |
|
|
| T |
44444495 |
actagatcatccgtcaagcaagtcctctaatggaacaaaagatcttcta |
44444543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 25911951 - 25912046
Alignment:
| Q |
273 |
ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct |
368 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
25911951 |
ttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtct |
25912046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 25911657 - 25911698
Alignment:
| Q |
43 |
cacatggaagacaggaaagtaaatggaagggtgaggtgaaat |
84 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25911657 |
cacatggaagacaggaaagtaaatggtagggtgaggtgaaat |
25911698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 44444614 - 44444674
Alignment:
| Q |
458 |
cttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaac |
518 |
Q |
| |
|
|||||| ||||| ||||||||| |||| ||||||||||||| | |||||||||||| |||| |
|
|
| T |
44444614 |
cttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaac |
44444674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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