View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1955_low_13 (Length: 252)
Name: NF1955_low_13
Description: NF1955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1955_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 6486861 - 6486678
Alignment:
| Q |
9 |
agcagagatagcagcagcaatggcagcagcaacaacaataataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcct |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486861 |
agcagaaatagcagcagcaatggcagcagcaacaacaacaataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcct |
6486762 |
T |
|
| Q |
109 |
atactgacgatgactatgccatgcgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486761 |
atactgacgatgactatgccatgcgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
6486678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University