View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1955_low_3 (Length: 448)

Name: NF1955_low_3
Description: NF1955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1955_low_3
NF1955_low_3
[»] chr4 (8 HSPs)
chr4 (200-419)||(37252927-37253146)
chr4 (203-419)||(37232684-37232897)
chr4 (30-133)||(37252745-37252848)
chr4 (207-377)||(37257059-37257238)
chr4 (212-291)||(37244881-37244960)
chr4 (295-346)||(37237700-37237751)
chr4 (372-416)||(37241994-37242038)
chr4 (63-131)||(37256922-37256990)
[»] chr6 (5 HSPs)
chr6 (206-290)||(14316682-14316766)
chr6 (206-291)||(14253954-14254039)
chr6 (206-285)||(14248144-14248223)
chr6 (377-416)||(14254119-14254158)
chr6 (374-416)||(14248312-14248354)
[»] scaffold0902 (2 HSPs)
scaffold0902 (206-283)||(3200-3277)
scaffold0902 (367-416)||(3361-3410)
[»] scaffold1652 (2 HSPs)
scaffold1652 (205-280)||(595-670)
scaffold1652 (377-416)||(462-501)
[»] scaffold1176 (2 HSPs)
scaffold1176 (206-285)||(371-450)
scaffold1176 (367-416)||(1360-1409)
[»] scaffold1801 (2 HSPs)
scaffold1801 (244-284)||(268-308)
scaffold1801 (367-416)||(127-176)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 200 - 419
Target Start/End: Original strand, 37252927 - 37253146
Alignment:
Q  200 ctcgagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaagg 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37252927 ctcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggcaccgttttcggaagg 37253026  T
Q  300 tccttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatg 399  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37253027 tccttcggaaggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatg 37253126  T
Q  400 gctgaaggtgaaggagatgg 419  Q
    ||||||||||||||||||||    
T  37253127 gctgaaggtgaaggagatgg 37253146  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 203 - 419
Target Start/End: Original strand, 37232684 - 37232897
Alignment:
Q  203 gagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaaggtcc 302  Q
    ||||||||||||| | |||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||   || ||| |    
T  37232684 gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgttt---gatggtgc 37232780  T
Q  303 ttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggaggagatggtggagagttgatggct 402  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||| | | ||||| ||  | || |||||||||||||||||||||||||||||||||||     
T  37232781 ttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaaccagaggaagcaggaggaggagatggtggagagttgatggcg 37232880  T
Q  403 gaaggtgaaggagatgg 419  Q
    || || |||||||||||    
T  37232881 gatggcgaaggagatgg 37232897  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 37252745 - 37252848
Alignment:
Q  30 aagaataaaaaatgtatcactgattaattaaagtaataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaaccgagaaac 129  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37252745 aagaagaaaaaatgtgtcactgattaattaaagtaataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaacagagaaac 37252844  T
Q  130 aaca 133  Q
    ||||    
T  37252845 aaca 37252848  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 207 - 377
Target Start/End: Original strand, 37257059 - 37257238
Alignment:
Q  207 aactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccg---ttttcggaaggtc-- 301  Q
    ||||||||| | ||||||||| |||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||| ||   || || ||||||       
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  302 ----cttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggagg 377  Q
        |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 37257238  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 37244881 - 37244960
Alignment:
Q  212 tctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 291  Q
    |||||| ||||||| | || ||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgttt 37244960  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 37237700 - 37237751
Alignment:
Q  295 gaaggtccttcagaaggaggagtggagatggatgatggagtaagagcaggag 346  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  37237700 gaaggtgcttcagaaggaggagtagagatggatgatggagtaacagcaggag 37237751  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 37241994 - 37242038
Alignment:
Q  372 aggaggaggagatggtggagagttgatggctgaaggtgaaggaga 416  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  37241994 aggaggaggagatggtggagagttgatggcggacggtgaaggaga 37242038  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 37256922 - 37256990
Alignment:
Q  63 taataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaaccgagaaacaa 131  Q
    |||| ||||||||||||||||||||  ||||||| ||| || ||| ||||||||||||| ||| |||||    
T  37256922 taatcaatagattacagaaaataataaaatgaatgaatggtagtcacacagatcgaaacagagcaacaa 37256990  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 14316682 - 14316766
Alignment:
Q  206 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgtt 290  Q
    |||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14316682 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 14253954 - 14254039
Alignment:
Q  206 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 291  Q
    |||||||||| | ||||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgttt 14254039  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 14248144 - 14248223
Alignment:
Q  206 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 285  Q
    |||||||||| | ||||||||| ||  | |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  14248144 taactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 14254119 - 14254158
Alignment:
Q  377 gaggagatggtggagagttgatggctgaaggtgaaggaga 416  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  14254119 gaggagatggtggagagttgatggcagacggtgaaggaga 14254158  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 14248312 - 14248354
Alignment:
Q  374 gaggaggagatggtggagagttgatggctgaaggtgaaggaga 416  Q
    |||||||||||| ||||||||||||||| || |||||||||||    
T  14248312 gaggaggagatgatggagagttgatggcagacggtgaaggaga 14248354  T

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Target: scaffold0902 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 3200 - 3277
Alignment:
Q  206 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcgg 283  Q
    |||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  3200 taactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

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Target: scaffold0902; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 3361 - 3410
Alignment:
Q  367 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggaga 416  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||    
T  3361 gaagcatgaggaggagatggtggagagttgatggcagacggtgaaggaga 3410  T

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Target: scaffold1652 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 670 - 595
Alignment:
Q  205 gtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaag 280  Q
    ||||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  670 gtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

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Target: scaffold1652; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 416
Target Start/End: Complemental strand, 501 - 462
Alignment:
Q  377 gaggagatggtggagagttgatggctgaaggtgaaggaga 416  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  501 gaggagatggtggagagttgatggcagacggtgaaggaga 462  T

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Target: scaffold1176 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  206 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 285  Q
    |||||||||| | ||||||||| ||   ||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

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Target: scaffold1176; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 1409 - 1360
Alignment:
Q  367 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggaga 416  Q
    |||||| ||||||||||||||||| ||||||||||  | |||||||||||    
T  1409 gaagcatgaggaggagatggtggacagttgatggcacacggtgaaggaga 1360  T

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Target: scaffold1801 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 308 - 268
Alignment:
Q  244 acagcagcagatccggcaacggtaaatctgttcaaagcggc 284  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  308 acagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

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Target: scaffold1801; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 176 - 127
Alignment:
Q  367 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggaga 416  Q
    |||||| ||||||||||| |||||||||||||||| || |||||||||||    
T  176 gaagcatgaggaggagattgtggagagttgatggcagacggtgaaggaga 127  T

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