View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19560_high_5 (Length: 210)
Name: NF19560_high_5
Description: NF19560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19560_high_5 |
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| [»] scaffold0770 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 50566092 - 50565925
Alignment:
| Q |
20 |
ctttcaagttcacaccgactaataactgctgcataaattgattataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaattt |
119 |
Q |
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| T |
50566092 |
ctttcaagttcacacaaactaatgactaccgcataaattgattataaatatgtcttatgaacaactctttagtacat--gagtatatgaaatttcaattt |
50565995 |
T |
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| Q |
120 |
gagagggtatgtaagagtattgtataagaagaatttttagaaacttatgtgatcttattgtgtctttttt |
189 |
Q |
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| T |
50565994 |
gagagggtatgtaagagtattgtagaagaagaattcttaaaaaattatgttatcttattgtgcctttttt |
50565925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 50513874 - 50513739
Alignment:
| Q |
63 |
ataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaagaatttttagaaa |
162 |
Q |
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| T |
50513874 |
ataaatatgtcttatgaacaactctttagtacatatgagtatatgaaatttcaatttgagagggtatgtaagagtattgttgaagaagaactcttaaaaa |
50513775 |
T |
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| Q |
163 |
cttatgtgatcttattgtgtcttttttcttcatctc |
198 |
Q |
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| T |
50513774 |
cttatgtgatcttattgtgtcttttttcttcttctc |
50513739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 38924568 - 38924497
Alignment:
| Q |
127 |
tatgtaagagtattgtataagaagaatttttagaaacttatgtgatcttattgtgtcttttttcttcatctc |
198 |
Q |
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| T |
38924568 |
tatgtaagagtattgtataagaagaatttttaaaaacttatgtgatcttattgtgtcttttttcttcttctc |
38924497 |
T |
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Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 4518 - 4586
Alignment:
| Q |
77 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
149 |
Q |
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| T |
4518 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
4586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 102822 - 102890
Alignment:
| Q |
77 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
149 |
Q |
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| T |
102822 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
102890 |
T |
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