View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19560_low_1 (Length: 449)
Name: NF19560_low_1
Description: NF19560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19560_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 88 - 433
Target Start/End: Original strand, 30545901 - 30546241
Alignment:
| Q |
88 |
tgttaacccttcggtttatataagaagaggtcctcgtaatctcaaattcgatcgtgatctaactataacttgacaaaaaattgatccacctaaaaatcga |
187 |
Q |
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| T |
30545901 |
tgttaacccttcagtttatatgagaagaggtcctcgtaatctcaaattcgatcgtgatctaactataacctgataaagaattgatccacctaaaaatcaa |
30546000 |
T |
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| Q |
188 |
attcgagttctctaaaacagttcgttgtttgaacaaatttgttatacacttaagagtaattgtttggtttaatattcatggagtcacccacataatgagg |
287 |
Q |
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| T |
30546001 |
attcgagttctctaaaacagtttgttgtttgaacaaatttgttatacacttaagagtaattgtttggtttaatattcatg-----acccacataacgagg |
30546095 |
T |
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| Q |
288 |
atgcagttgagcaatacataactttcacttgaaaacttctcacacggtctctttaagatgccgaaacatccactgatccacttctagacagaacaggacc |
387 |
Q |
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| T |
30546096 |
atgcagttgagcaatacataactttcacttgaaaacttctcacacggtctctttaagatgccgaaacatccactgatccacttctagacagaacaggacc |
30546195 |
T |
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| Q |
388 |
aaccgacgctactgctaaacataactattaatgtccattaatgaat |
433 |
Q |
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| T |
30546196 |
aaccgacgctactgctaaacataaatattaatgtccattaatgaat |
30546241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30545773 - 30545857
Alignment:
| Q |
1 |
aacagtgcaacgttttagcgtaccttgtaggcatagttcatttgagattgtgtctgatttcaattgaaattgttcatattctaat |
85 |
Q |
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| T |
30545773 |
aacactgcaacgttttagcgtaccttgtaggcatagttcatttgagattgtgtctgatttcaattgaaattgttcatattctaat |
30545857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 10759318 - 10759351
Alignment:
| Q |
158 |
tgacaaaaaattgatccacctaaaaatcgaattc |
191 |
Q |
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| T |
10759318 |
tgacaaaaaattgttccacctaaaaatcgaattc |
10759351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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