View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19560_low_2 (Length: 327)

Name: NF19560_low_2
Description: NF19560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19560_low_2
NF19560_low_2
[»] chr8 (1 HSPs)
chr8 (16-312)||(5274957-5275253)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5274957 - 5275253
Alignment:
Q  16 atgcatataactattatgcatgcactattttcatattgggagaagaaatttaattggttgagtcacatttcgtgaattcgtgaataatttaaaaagttat 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||    
T  5274957 atgcatataactattatgcatgcactattttcataatgggagaagaaatttaattggttgagtcacatttcgtgaattcatgaatcatttgaaaagctat 5275056  T
Q  116 ttttcgcgataaataacaccactcatttnnnnnnnnnctcattttaaattgtactagtatcatacaatcttacttgttttcattttctatgtttgtgagt 215  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  5275057 ttttcgcgataaataacaccactcatttataaaaaaactcattttaaattgtactggtatcatacaatcttacttgttttcattttctatgtctgtgagt 5275156  T
Q  216 gtaattaattatataagtcacctttcaactaatctaataccatgaaaatttgggtcctttgactcctatataatgagttcgaaatttacatcatatc 312  Q
    ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5275157 gtagttaattatacaagtcacctttcaactaatccaataccatgaaaatttgggtcctttgactcctatataatgagttcgaaatttacatcgtatc 5275253  T

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