View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19560_low_6 (Length: 207)
Name: NF19560_low_6
Description: NF19560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19560_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 31691156 - 31690985
Alignment:
| Q |
19 |
atcataacataaactatgtttgaaaagtaaatatattcaaaatgataggaaaaactgtttgtttt-ttaacaagataaaagaaactgttaattaataact |
117 |
Q |
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| T |
31691156 |
atcataacataaactatgtttgaaaagtaaataaattcaaaatgataggaaaaactgttttttttcttaacaagataaaagaaactgttaattaataact |
31691057 |
T |
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| Q |
118 |
tatattttatttcacatcatgtataatattagaatatacattgagatgcactcctttattactactttttgt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691056 |
tatattttatttcacatcatgtataatattagaatatacattgagatgcactcctttattactactttttgt |
31690985 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 17760902 - 17760970
Alignment:
| Q |
121 |
attttatttcacatcatgtataatattagaatatacattgagatgcactcctttattactactttttgt |
189 |
Q |
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| T |
17760902 |
attttatttcacatcatgcataacattggaatatacattgggatacaatcctttattattaatttttgt |
17760970 |
T |
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