View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19562_high_2 (Length: 506)
Name: NF19562_high_2
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19562_high_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 131 - 506
Target Start/End: Original strand, 9037365 - 9037740
Alignment:
| Q |
131 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcatcaggcatt |
230 |
Q |
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| T |
9037365 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcaccaggcatt |
9037464 |
T |
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| Q |
231 |
gggagaacaccatcacagtgataattatctagcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgataaacgatct |
330 |
Q |
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| T |
9037465 |
ggtagaacaccatcacagtgataattatctcgcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgatcaaagatct |
9037564 |
T |
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| Q |
331 |
attacccttgaattgcttggccaagcatgtgaggaatatgggttcttctatgtaagttttttccaacgatggaacacaactttaagcggtagtatttaaa |
430 |
Q |
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| T |
9037565 |
attgcccttgaattgcttggccaagcatgtgaggaatatgggttcttctatgtaagttttttccaacgatggaacacaactttaagcggtagtatttaaa |
9037664 |
T |
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| Q |
431 |
tgatatttttctgataaagaactattcaaacccttaggtcaattattcatttatattcgttgtctgcttaagaaaa |
506 |
Q |
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| T |
9037665 |
tgatatctttctgataaagaactattcaaacccttaggtcaattattcatttatattcgttgtctgcttaagaaaa |
9037740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 131 - 391
Target Start/End: Original strand, 9042855 - 9043115
Alignment:
| Q |
131 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcatcaggcatt |
230 |
Q |
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| T |
9042855 |
taatggttcaaataagatcatttgtatccaaattacactctttcccaccggaatttaaagctgccccggtttattttaatgtttcatctcatgaggcatt |
9042954 |
T |
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| Q |
231 |
gggagaacaccatcacagtgataattatctagcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgataaacgatct |
330 |
Q |
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| T |
9042955 |
gagagaacaccaccatagtgataattatatagcttcaaatgaagaaatacccacaattgattattcactattattatctgatgacactgatcaaagatct |
9043054 |
T |
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| Q |
331 |
attacccttgaattgcttggccaagcatgtgaggaatatgggttcttctatgtaagttttt |
391 |
Q |
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| T |
9043055 |
attacccttgaactccttagtcatgcatgtgaagaatatgggttcttctatgtaagttttt |
9043115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 384
Target Start/End: Original strand, 9029099 - 9029228
Alignment:
| Q |
255 |
ttatctagcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgataaacgatctattacccttgaattgcttggccaa |
354 |
Q |
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| T |
9029099 |
ttatctagcttctgatgaagaaataccaacaattgattattctctattattatctgatggcactaatcaaagatctattgcccttgaattgcttggccaa |
9029198 |
T |
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| Q |
355 |
gcatgtgaggaatatgggttcttctatgta |
384 |
Q |
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| T |
9029199 |
gcatgtgaggaatatggtttcttctatgta |
9029228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 9037243 - 9037295
Alignment:
| Q |
13 |
attatactgcacatatattattcatattcaacatattagttttacagataaca |
65 |
Q |
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| T |
9037243 |
attatactgcacatatattattcatattcaacatattagttttacagataaca |
9037295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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