View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19562_high_6 (Length: 300)
Name: NF19562_high_6
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19562_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 2045335 - 2045059
Alignment:
| Q |
18 |
gtctctaatcaaaccaccattcttagctttaatgttcttgatgcgaagaccgtgaatgatgacattgttgacgaattgcatggtaattccagcaccttcc |
117 |
Q |
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| T |
2045335 |
gtctctaatcaaaccaccattcttagctttaatgttcttgatgcgaagaccgtgaatgatgacattgttgacgaattgcatggtaattccagcaccttcc |
2045236 |
T |
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| Q |
118 |
ctaatttgcacattggctccacgaccatcgatggtcttgtcggatgaaaccattaactcttgagtcaatgtaatgaccatgttacgttggaaaataatcc |
217 |
Q |
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| T |
2045235 |
ctaatttgcacattggctccacgaccgtcgatggtcttgtcggatgaaaccattaactcttgagtcaatgtaatgaccatgttacgttggaaaataatcc |
2045136 |
T |
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| Q |
218 |
aaagtggtcccttttgaacggcaccaaatcggagagttccaggtcttgggttcaccatatcattgtcggaaggatct |
294 |
Q |
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| T |
2045135 |
aaagtggtcccttttgaacggcaccaaatcggagagttccaggtcttgggttcaccaaatcgttgtcggaaggatct |
2045059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 70 - 281
Target Start/End: Original strand, 3225185 - 3225396
Alignment:
| Q |
70 |
tgaatgatgacattgttgacgaattgcatggtaattccagcaccttccctaatttgcacattggctccacgaccatcgatggtcttgtcggatgaaacca |
169 |
Q |
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|||||||| ||||| || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||| || ||||||| |
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| T |
3225185 |
tgaatgataacattattaacaaattgcattgtaattccagcaccatccctaatttgaacattagctccacgaccatcaattgttttgtcagaagaaacca |
3225284 |
T |
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| Q |
170 |
ttaactcttgagtcaatgtaatgaccatgttacgttggaaaataatccaaagtggtcccttttgaacggcaccaaatcggagagttccaggtcttgggtt |
269 |
Q |
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| T |
3225285 |
tcaattcttggttcaatctaatgaccatgctacgtgcaaaagtgatccataatggtcccttttggacagcaccaaatctaagggttccaggtttagggtt |
3225384 |
T |
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| Q |
270 |
caccatatcatt |
281 |
Q |
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||||| ||||| |
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| T |
3225385 |
taccatgtcatt |
3225396 |
T |
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