View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19562_low_1 (Length: 600)

Name: NF19562_low_1
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19562_low_1
NF19562_low_1
[»] chr6 (3 HSPs)
chr6 (42-586)||(6281236-6281792)
chr6 (415-476)||(17221582-17221643)
chr6 (409-477)||(7447636-7447704)
[»] chr3 (4 HSPs)
chr3 (385-532)||(54186944-54187091)
chr3 (385-477)||(13639421-13639513)
chr3 (385-477)||(29235666-29235758)
chr3 (385-454)||(48543236-48543305)
[»] chr7 (4 HSPs)
chr7 (385-478)||(17878699-17878792)
chr7 (403-477)||(557447-557521)
chr7 (385-494)||(47821998-47822107)
chr7 (385-448)||(43930058-43930121)
[»] chr5 (4 HSPs)
chr5 (385-477)||(5990589-5990681)
chr5 (418-514)||(34320893-34320989)
chr5 (403-494)||(18237189-18237280)
chr5 (385-477)||(30892126-30892218)
[»] chr1 (4 HSPs)
chr1 (385-477)||(24886056-24886148)
chr1 (385-477)||(19078930-19079022)
chr1 (385-477)||(19126818-19126910)
chr1 (403-438)||(35728000-35728035)
[»] chr4 (4 HSPs)
chr4 (409-532)||(51475179-51475302)
chr4 (415-477)||(37306476-37306538)
chr4 (385-454)||(31699572-31699641)
chr4 (385-532)||(30111786-30111932)
[»] chr2 (1 HSPs)
chr2 (403-454)||(864193-864244)
[»] chr8 (1 HSPs)
chr8 (409-477)||(33440574-33440642)


Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 42 - 586
Target Start/End: Complemental strand, 6281792 - 6281236
Alignment:
Q  42 catagcgaaattttaattaaattgattgatgtaataagtcaattaatttattgggtacaaaa------------------atattagatactaagatgtg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||    
T  6281792 catagcgaaattttaattaaattgattgatgtaataagtcaattaatttattgggtacaaaactttattcatataacaatatattagatactaagatgtg 6281693  T
Q  124 tttatcctctaagtacaactcttgataactgcaaagataataatatatagtgacaggtgttcgaacttccgattctccacacttaaagtgtgtgatttga 223  Q
    ||||||||| ||||||||||||| ||||||||||  ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6281692 tttatcctccaagtacaactctttataactgcaagaataataatatataatgataggtgttcgaactcccgattctccacacttaaagtgtgtgatttga 6281593  T
Q  224 gttagtaggtcatttgactnnnnnnnnnnnnnnnnnntgtgtctggattatagtaaagggtcaatttttctctcttcctatcaaatgtgattttaataaa 323  Q
    |||||||||||||||||||                  || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6281592 gttagtaggtcatttgactaaaaatataacactaaaatgagtctggattatagtaaagggtcaatttttctctcttcctatcaaatatgattttaataaa 6281493  T
Q  324 aatgtatatacggtaccatacattggaaatggatcttacataatgtctgaattatactatttttctaacactctcacacacacttactctattattggat 423  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  6281492 aatgtatatacggtaccatacattgaaaatagatcttacataaagtctgaattatactatttttttaacactctcacacacacttactttattattggat 6281393  T
Q  424 gaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagatttacatggatttcaccacatcagagagtaaatgttacagagaatg 523  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  6281392 gaaattcaagt--gtaccatacattagaaatagatctgacataaagtggtgagatctacatggatttcaccacatcagaaagtaaatgttacatagaatg 6281295  T
Q  524 atagaaagaaagagaatgtttttagcatttctcttgtttttctaaataatcattgaacatatt 586  Q
    ||    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6281294 at----agaaagagaatgtttttaacatttctcttgtttttctaaataatcattgaacatatt 6281236  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 17221643 - 17221582
Alignment:
Q  415 ttattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgag 476  Q
    ||||||||||||||||| || |||||||||||||  ||||||||   |||||||||||||||    
T  17221643 ttattggatgaaattcatgtaggtaccatacattgaaaatagatcccacataaagtggtgag 17221582  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 477
Target Start/End: Complemental strand, 7447704 - 7447636
Alignment:
Q  409 actctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    ||||| || |||| ||||||||| |||||||||| ||||||||||| |||   ||||||||||||||||    
T  7447704 actctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgaga 7447636  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 385 - 532
Target Start/End: Complemental strand, 54187091 - 54186944
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagatttacat 484  Q
    |||||||||||||| |  ||||| ||||| ||||||| |||| |||| |||||||||| ||||||||||| |||   ||||||| |||||||||| ||||    
T  54187091 tttctaacactctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacat 54186992  T
Q  485 ggatttcaccacatcagagagtaaatgttacagagaatgatagaaaga 532  Q
    |  |||||||  ||  |||||| ||||||| ||||| || ||||||||    
T  54186991 gagtttcacccaataggagagtgaatgttagagagagtgttagaaaga 54186944  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 13639421 - 13639513
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    |||||||||||||| |  ||| | ||||| ||||||||||||||||| ||||||| || ||||| ||||| ||| | ||||||||||||||||    
T  13639421 tttctaacactctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgaga 13639513  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 29235666 - 29235758
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    |||||||||||||| |  ||||| ||||| ||||||| ||||||||| | || ||||| ||||||||||| |||   ||||||||||||||||    
T  29235666 tttctaacactctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgaga 29235758  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 48543305 - 48543236
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaat 454  Q
    |||||||||||||| |  ||||| ||||| ||||||| ||||||||| ||||||| |||||||| |||||    
T  48543305 tttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaat 48543236  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 478
Target Start/End: Original strand, 17878699 - 17878792
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagat 478  Q
    ||||||||||||||    ||| ||||||| ||||||| ||||| ||| ||||||| || |||||||||||||||   |||||||||||||||||    
T  17878699 tttctaacactctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagat 17878792  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 477
Target Start/End: Complemental strand, 557521 - 557447
Alignment:
Q  403 acacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    ||||| ||||| ||||||||||||||||| ||||||| || |||||| |||| |||   ||||||||||||||||    
T  557521 acactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgaga 557447  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 385 - 494
Target Start/End: Original strand, 47821998 - 47822107
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagatttacat 484  Q
    |||||| ||||||| |  ||||| |||||  |||||| |||||| || |||||||||| ||||| ||||| |||   |||||||||||||||||  ||||    
T  47821998 tttctagcactctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacat 47822097  T
Q  485 ggatttcacc 494  Q
    || |||||||    
T  47822098 gggtttcacc 47822107  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 43930121 - 43930058
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacatt 448  Q
    |||||||||||||| |  ||||| ||||| ||||||| ||||||||| |||||||||| |||||    
T  43930121 tttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacatt 43930058  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 477
Target Start/End: Complemental strand, 5990681 - 5990589
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    ||||||||||| || |  ||||| ||||| ||||||| ||||||||| |||||||||||||||| ||||| |||   ||||||| ||||||||    
T  5990681 tttctaacactttctccaacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgaga 5990589  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 34320989 - 34320893
Alignment:
Q  418 ttggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagatttacatggatttcaccacatcagagagtaaatgtta 514  Q
    |||| |||||| || |||| |||||||| ||  ||||||||   |||||||||||||||| | |||||||||||| || || ||||||| |||||||    
T  34320989 ttgggtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacatggatttcatcaaatgagagagttaatgtta 34320893  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 494
Target Start/End: Complemental strand, 18237280 - 18237189
Alignment:
Q  403 acacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagatttacatggatttcacc 494  Q
    ||||| ||||| ||||||| ||||||||| ||||||| || |||||  ||||||||   ||||||||||||||||   ||||| ||||||||    
T  18237280 acactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaatttcacc 18237189  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 30892126 - 30892218
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    |||||||||||||  |  ||||| ||||| ||||| | |||| |||| |||||||||| ||||||||||| |||   ||||||| ||||||||    
T  30892126 tttctaacactctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgaga 30892218  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 24886056 - 24886148
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    |||||||||||||| |  ||||| ||||| ||||||| ||||||||| |||||||||| |||||  ||||||||   |||||||| |||||||    
T  24886056 tttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatcccacataaagcggtgaga 24886148  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 19078930 - 19079022
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    |||||||||||||| |  ||||| ||||| ||||||| ||||| ||| | |||||||| ||||| ||||| |||   ||||||||||||||||    
T  19078930 tttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19079022  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 477
Target Start/End: Original strand, 19126818 - 19126910
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    |||||||||||||| |  ||||| ||||| ||||||| ||||| ||| | |||||||| ||||| ||||| |||   ||||||||||||||||    
T  19126818 tttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19126910  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 35728035 - 35728000
Alignment:
Q  403 acacttactctattattggatgaaattcaagtgggt 438  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35728035 acacttactcttttattggatgaaattcaagtgggt 35728000  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 532
Target Start/End: Complemental strand, 51475302 - 51475179
Alignment:
Q  409 actctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagatttacatggatttcaccacatcagagagtaa 508  Q
    ||||| ||||||| |||||| || |||||||||| ||||| ||||| |||   |||||||||||||||||  |||||| |||||||  || |||| || |    
T  51475302 actctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaataagagggtga 51475203  T
Q  509 atgttacagagaatgatagaaaga 532  Q
     ||||| ||||| || ||||||||    
T  51475202 gtgttagagagagtgctagaaaga 51475179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 477
Target Start/End: Complemental strand, 37306538 - 37306476
Alignment:
Q  415 ttattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    ||||||| ||||||||| |||||||||| ||||| ||||| ||| | ||||||||||||||||    
T  37306538 ttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgaga 37306476  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 31699641 - 31699572
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaat 454  Q
    |||||||||||||| |  ||||| ||||| ||||||| ||||||||| ||||||| |||||||| |||||    
T  31699641 tttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaat 31699572  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 532
Target Start/End: Original strand, 30111786 - 30111932
Alignment:
Q  385 tttctaacactctcacacacacttactctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgagatttacat 484  Q
    |||||||||||||| |  ||||| ||| | ||||||||||||| ||| |||||||||| ||||| | ||| |||   |||||||||||||||||  ||||    
T  30111786 tttctaacactctctctaacactcactttcttattggatgaaagtcatgtgggtaccacacatt-ggaattgatcccacataaagtggtgagatccacat 30111884  T
Q  485 ggatttcaccacatcagagagtaaatgttacagagaatgatagaaaga 532  Q
    |  |||||||  ||  |||||| | ||||  |||||||| ||||||||    
T  30111885 gagtttcacccaatatgagagtgagtgtttgagagaatgttagaaaga 30111932  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 864244 - 864193
Alignment:
Q  403 acacttactctattattggatgaaattcaagtgggtaccatacattagaaat 454  Q
    ||||| ||||| ||||||| ||||||||| |||||||||| |||||||||||    
T  864244 acactcactctcttattgggtgaaattcatgtgggtaccacacattagaaat 864193  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 477
Target Start/End: Complemental strand, 33440642 - 33440574
Alignment:
Q  409 actctattattggatgaaattcaagtgggtaccatacattagaaatagatttgacataaagtggtgaga 477  Q
    ||||| ||||||| ||||| ||| |||||||||| ||||| ||||| |||   ||||||||||||||||    
T  33440642 actctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 33440574  T

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