View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19562_low_11 (Length: 212)
Name: NF19562_low_11
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19562_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 6480033 - 6480219
Alignment:
| Q |
10 |
catcatcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
109 |
Q |
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||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6480033 |
catcaccacaatcgattacgctctccctaacaaaaaccacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
6480132 |
T |
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| Q |
110 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttc |
196 |
Q |
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| T |
6480133 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttc |
6480219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 6489519 - 6489336
Alignment:
| Q |
10 |
catcatcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
109 |
Q |
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||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
6489519 |
catcaccacaatcggttatgctctccctaacaaaactcacaa---gtacgatgtcttctttcactcagacatcattcacacaatgatcacaaatagacct |
6489423 |
T |
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| Q |
110 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttc |
196 |
Q |
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| T |
6489422 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttc |
6489336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 51946769 - 51946955
Alignment:
| Q |
10 |
catcatcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
109 |
Q |
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||||| |||||||||||| | | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51946769 |
catcaccacaatcgattacgctgtccctaataaaactcacaacaagcacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
51946868 |
T |
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| Q |
110 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttc |
196 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
51946869 |
ttcatggtggacaaatggctctcaagcatcaaaccatacgaaaacaacaatagcttccttgtcggcttagatgttgagtgtctcttc |
51946955 |
T |
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