View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19562_low_12 (Length: 209)
Name: NF19562_low_12
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19562_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 10096035 - 10096192
Alignment:
| Q |
30 |
atttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtatatataagtaggaggaaatcatatcctgacatgctgcaataatttgg |
129 |
Q |
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| T |
10096035 |
atttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtata----agtaggaggaaatcatatcctgacatgctgcaataatttgg |
10096130 |
T |
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| Q |
130 |
ccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgac |
191 |
Q |
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| T |
10096131 |
ccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgac |
10096192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 10035667 - 10035824
Alignment:
| Q |
30 |
atttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtatatataagtaggaggaaatcatatcctgacatgctgcaataatttgg |
129 |
Q |
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| T |
10035667 |
atttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtata----agtaggaggaaatcatatcctgacatattgcaataatttgg |
10035762 |
T |
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| Q |
130 |
ccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgac |
191 |
Q |
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| T |
10035763 |
ccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgac |
10035824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 29358584 - 29358546
Alignment:
| Q |
108 |
ctgacatgctgcaataatttggccgaactctgtaacatc |
146 |
Q |
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| T |
29358584 |
ctgacatgctgcaattatttggccgaactcagtaacatc |
29358546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 49077326 - 49077290
Alignment:
| Q |
109 |
tgacatgctgcaataatttggccgaactctgtaacat |
145 |
Q |
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| T |
49077326 |
tgacatgctgcaattatttggccgaactcagtaacat |
49077290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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