View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19562_low_2 (Length: 552)

Name: NF19562_low_2
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19562_low_2
NF19562_low_2
[»] chr8 (2 HSPs)
chr8 (63-135)||(12933811-12933883)
chr8 (75-112)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (63-135)||(14177081-14177153)
chr4 (21-135)||(28608680-28608794)
chr4 (74-127)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (105-142)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (105-142)||(796698-796735)
chr6 (105-142)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (105-142)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 12933883 - 12933811
Alignment:
Q  63 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 135  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933883 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  75 ggttgctccatataaatctcctcttccaaatctccatg 112  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 14177153 - 14177081
Alignment:
Q  63 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 135  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177153 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 28608680 - 28608794
Alignment:
Q  21 ctcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaat 119  Q
    ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||    
T  28608680 ctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaat 28608778  T
Q  120 gcagttttcacatcca 135  Q
    ||||| || |||||||    
T  28608779 gcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  74 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 127  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  105 tctccatgaagaaatgcagttttcacatccaactgctc 142  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  105 tctccatgaagaaatgcagttttcacatccaactgctc 142  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  105 tctccatgaagaaatgcagttttcacatccaactgctc 142  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  105 tctccatgaagaaatgcagttttcacatccaactgctc 142  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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