View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19562_low_4 (Length: 474)
Name: NF19562_low_4
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19562_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 2012449 - 2012790
Alignment:
| Q |
7 |
gtgagatgaatgtccggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaa |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012449 |
gtgacatgaatgtccggatgaagctggataagtaactttgagaaatgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaa |
2012548 |
T |
|
| Q |
107 |
ttgttttatccatgaaatttgaggccaatttcatgaatgaaactcacctagccaaagacttgtatagattttaaagccaagttcatggttgaaagtttgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012549 |
ttgttttatccatgaaatttgaggccaagttcatgaatgaaactcacctagccaaagacttgtatagattttaaagccaagttcatggttgaaagtttgg |
2012648 |
T |
|
| Q |
207 |
ttttaagatattttggtatgcaccagtatatctgcatttcacaacttctacctaacacaatattgagaatttcaccctatagtcaacactaccttataat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2012649 |
ttttaagatattttggtatgcaccagtatatctgcatttcacaacttctacctaacacaatattgagaatttcaccctatagtcaacactaccttataat |
2012748 |
T |
|
| Q |
307 |
tgttagatacatataggacaataactgaggacgtgtataaca |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2012749 |
tgttagatacatataggacaataactgaggacgtgtataaca |
2012790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 353 - 463
Target Start/End: Complemental strand, 1964771 - 1964661
Alignment:
| Q |
353 |
gaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatcccgaaatggatccgttgctt |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1964771 |
gaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatcccgaaatggatccgttgctt |
1964672 |
T |
|
| Q |
453 |
gttttgatgat |
463 |
Q |
| |
|
|||||| |||| |
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|
| T |
1964671 |
gttttgctgat |
1964661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 353 - 432
Target Start/End: Original strand, 2011923 - 2012002
Alignment:
| Q |
353 |
gaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
2011923 |
gaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatc |
2012002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 2019246 - 2019347
Alignment:
| Q |
22 |
ggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccatga |
121 |
Q |
| |
|
||||||||||| | ||||| ||| |||||||||||||| |||| |||||| ||||| || |||||||||||||| ||||| |||| |||||| ||||||| |
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|
| T |
2019246 |
ggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaacacctggaacaactgcaatatgaactgttttctccatga |
2019345 |
T |
|
| Q |
122 |
aa |
123 |
Q |
| |
|
|| |
|
|
| T |
2019346 |
aa |
2019347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 432
Target Start/End: Complemental strand, 1968707 - 1968628
Alignment:
| Q |
353 |
gaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatc |
432 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| | || | ||||||||||||||| |||||||||||| |
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|
| T |
1968707 |
gaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatc |
1968628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 432
Target Start/End: Original strand, 2008308 - 2008387
Alignment:
| Q |
353 |
gaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||| | | ||||||||||||||| |||||||||||| |
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|
| T |
2008308 |
gaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatc |
2008387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 1968181 - 1968048
Alignment:
| Q |
7 |
gtgagatgaatgtccggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaa |
106 |
Q |
| |
|
|||| ||||| ||| |||||||| || | |||| ||| |||||||||||||||||||| || || | ||| || |||||||||||||| ||||| |||| |
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|
| T |
1968181 |
gtgacatgaaagtctggatgaagttgaacaagtctcttggagaattgaagaatagggaccaaatgactatatccaacacctggaacaactgcaatatgaa |
1968082 |
T |
|
| Q |
107 |
ttgttttatccat-gaaatttgaggccaatttca |
139 |
Q |
| |
|
|||||| ||||| ||||||||||| ||| |||| |
|
|
| T |
1968081 |
ctgttttctccatggaaatttgaggtcaagttca |
1968048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 2004928 - 2005005
Alignment:
| Q |
353 |
gaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttga |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | || ||||| ||||||||| |||||||||| |
|
|
| T |
2004928 |
gaagctattaacaagaacaccatcagcaaaacttaaaagtttaagaagtgcgaggaattgtttgtaagcttgacttga |
2005005 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 1964581 - 1964450
Alignment:
| Q |
47 |
agaattgaagaatagggactaagtg--tccatacccgacacctggaacaacggcaatgtgaattgttttatccat-gaaatttgaggccaatttcatgaa |
143 |
Q |
| |
|
||||||||||||||| |||||| || | |||||| |||||||||||||| ||||||||||| ||||| ||||| |||||| ||| |||| ||| | |
|
|
| T |
1964581 |
agaattgaagaatagagactaaatggatatatacccaacacctggaacaactgcaatgtgaatggttttctccatggaaattagagaccaagttc----a |
1964486 |
T |
|
| Q |
144 |
tgaaactcacctagccaaagacttgtatagatttta |
179 |
Q |
| |
|
||||| |||||||||| ||||| | ||||||||||| |
|
|
| T |
1964485 |
tgaaagtcacctagcccaagacctatatagatttta |
1964450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 2008849 - 2008956
Alignment:
| Q |
22 |
ggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccat-g |
120 |
Q |
| |
|
||||||||||| | |||| ||| |||||||||||||||||||| || || | ||| || |||||||||||||| ||||| |||| |||||| ||||| | |
|
|
| T |
2008849 |
ggatgaagctgaacaagtctcttggagaattgaagaatagggaccaaatggctatatccaacacctggaacaactgcaatatgaactgttttctccatgg |
2008948 |
T |
|
| Q |
121 |
aaatttga |
128 |
Q |
| |
|
|||||||| |
|
|
| T |
2008949 |
aaatttga |
2008956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 2013396 - 2013494
Alignment:
| Q |
22 |
ggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccatg |
120 |
Q |
| |
|
||||||||||| | ||||| ||| || ||||||||||| |||| |||||| | ||| || |||||||||||||| ||||| |||||| |||| |||||| |
|
|
| T |
2013396 |
ggatgaagctgaacaagtagcttcgaaaattgaagaattgggaataagtgactatatccaacacctggaacaactgcaatatgaatttttttctccatg |
2013494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 1962566 - 1962465
Alignment:
| Q |
22 |
ggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccatga |
121 |
Q |
| |
|
||||||||||| | ||||| || |||||||||||||| |||| |||||| | ||| || ||||| |||||||| ||||| |||| |||||| ||||||| |
|
|
| T |
1962566 |
ggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaactgttttctccatga |
1962467 |
T |
|
| Q |
122 |
aa |
123 |
Q |
| |
|
|| |
|
|
| T |
1962466 |
aa |
1962465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 2015863 - 2015960
Alignment:
| Q |
22 |
ggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccat |
119 |
Q |
| |
|
||||||||||| | |||| ||| |||||||||||||||| ||| || || | ||| || |||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
2015863 |
ggatgaagctgaacaagtctcttggagaattgaagaatagagaccaaatggctatatccaacacctggaacaactgcaatatgaattgttttctccat |
2015960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 2005493 - 2005567
Alignment:
| Q |
46 |
gagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccatg |
120 |
Q |
| |
|
|||||||||||||||| ||| || || | ||| || |||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
2005493 |
gagaattgaagaatagagaccaaatggctatatccaacacctggaacaactgcaatatgaattgttttctccatg |
2005567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 18189541 - 18189366
Alignment:
| Q |
12 |
atgaatgtccggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgtt |
111 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
18189541 |
atgaatgtctggatgaagatggataagtaactttgagaattgaagaatagggactaagtgtccatacccaacacctggaacaactgcaatgtgaattgtt |
18189442 |
T |
|
| Q |
112 |
ttatccat-gaaatttgaggccaatttcatgaatgaaactcacctagccaaagacttgtatagattttaaagccaa |
186 |
Q |
| |
|
|||||||| ||||||||| || || ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
18189441 |
ttatccatggaaatttgatgctaagttcatgaatgaaactcatgcagccaaaaacttgtatagattttaaagccaa |
18189366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 18189339 - 18189278
Alignment:
| Q |
193 |
ggttgaaagtttggttttaagatattttggtatgcaccagtatatctgcatttcacaacttc |
254 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||| | ||| ||||||||||||| |
|
|
| T |
18189339 |
ggttgaaagtttggttttaagattttttggtataaaccagtgtttctatatttcacaacttc |
18189278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 5901761 - 5901644
Alignment:
| Q |
6 |
agtgagatgaatgtccggatgaagctggataagtaactttgagaattgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtga |
105 |
Q |
| |
|
||||| ||||| ||| ||||| ||||| | ||||| ||| ||||||| |||||||| |||||| || | ||||| ||||||||| ||| ||||||||| |
|
|
| T |
5901761 |
agtgacatgaaagtctggatggagctgaacaagtagcttggagaattcaagaatagagactaaatggctataccaagcacctggaataacagcaatgtga |
5901662 |
T |
|
| Q |
106 |
attgttttatccatgaaa |
123 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
5901661 |
attgttttctccatgaaa |
5901644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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