View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19562_low_5 (Length: 418)
Name: NF19562_low_5
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19562_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 31179925 - 31179536
Alignment:
| Q |
16 |
atgatatttattggcttatgagttgtgacat--agtagtatatcctttgaccttatgtattatttagtttgcttgtgaaattggcaaattacttattatt |
113 |
Q |
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| T |
31179925 |
atgatatttattggcttatgagttgtgacatggagtagtatatcctttgaccttatgtattatttagtttgcttgtgaaattggcaaattacttattatt |
31179826 |
T |
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| Q |
114 |
tgatttaaagcacaagggataagaatgagcattttacatcattagaaagaatcatatccatatatgctatcccattcgtagtgttaccacaactatatat |
213 |
Q |
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| T |
31179825 |
tgatttaaagcacaagggataagaatgagcattttacatcattagaaagaatcatatccatatatgctatcccattcgtagtgttaccacaactatatat |
31179726 |
T |
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| Q |
214 |
gttttgctttttccacacagcaaggttccaagcaaccgttcccgtttgcatactccaaaaaattgatgttattatttttcatttagagggaactcaattg |
313 |
Q |
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| T |
31179725 |
gttttgctttttccacacagcaaggttccaagcaaccgttcccgtttgcatactccaaaaaattgatgttattatttttcatttagagggaactcaattg |
31179626 |
T |
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| Q |
314 |
gtatagatttcttggattggacaattcactgtttgcataattataatatgtcacaaagcaaatctatcaccatattggaacggtgcatgtgat |
406 |
Q |
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| T |
31179625 |
gtatagatttcttggattggacaattcacgttttgcataatt---atatgtcacaaagcaaatctatcaccatattgcaacagtgcatgtgat |
31179536 |
T |
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