View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19562_low_6 (Length: 374)
Name: NF19562_low_6
Description: NF19562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19562_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 31688537 - 31688335
Alignment:
| Q |
22 |
tgataaggtggagtgatcttatagaagaaggacgaagaaaacgaatgaggaaagagctacggaaaaagaggcttgtctcttttgtgtctgatatgtgaaa |
121 |
Q |
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| T |
31688537 |
tgataaggtggagcgatcttatagaagaaggacgaaaaaaacgaatgaggaaagacctacagaaaaagaggcttgtctcttttgtgtctgatatgtgaaa |
31688438 |
T |
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| Q |
122 |
cactcttgtttcttgnnnnnnnnnnnnattatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataa |
221 |
Q |
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| T |
31688437 |
cactcttgtttcttgtttttcttttttattatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataa |
31688338 |
T |
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| Q |
222 |
caa |
224 |
Q |
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||| |
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| T |
31688337 |
caa |
31688335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 31687311 - 31687236
Alignment:
| Q |
299 |
cttgtatataaacagtgtctagattgaattaataataaataaataaacagatagatgaagggatatttgcctgtat |
374 |
Q |
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| T |
31687311 |
cttgtatataaacagtgtctagattgaattaataataaataaataaacagatagatgaagggatatttgcctgtat |
31687236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 32793776 - 32793822
Alignment:
| Q |
299 |
cttgtatataaacagtgtctagattgaattaataataaataaataaa |
345 |
Q |
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| T |
32793776 |
cttgtatataataagtgtctagattgaagtaataataaatgaataaa |
32793822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 27649953 - 27649883
Alignment:
| Q |
149 |
attatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataa |
221 |
Q |
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||||||||| |||||||| |||||||||||||||| ||||||||||||||||| | |||||| ||||||||| |
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| T |
27649953 |
attatggctactgttcta--gtatttgatataactaagcagttaactgtttgttgattatggttacactataa |
27649883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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