View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_high_10 (Length: 473)
Name: NF19563_high_10
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 37469957 - 37469510
Alignment:
| Q |
9 |
agcacagaaacaaatataccgtaaacaaatttaagatgataagttggtagaatacgcatagttttgtgaagaaaaatatataattatacaagtgataaag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37469957 |
agcacagaaacaaatataccgtaaacaaatttaagatgataagttggtagaataagcatagttttgtgaagaaaaatatataattatacaagtgataaag |
37469858 |
T |
|
| Q |
109 |
aacactcactgaagcgaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37469857 |
aacactcactgaagcgaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctc |
37469758 |
T |
|
| Q |
209 |
caatagtctattgcaatggcaggagcaggaacattttcaattgcaccactatcaatgtccttcaaatactcagtgtaagaatgtatagcttcttcttcaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37469757 |
caatagtctattgcaatggcaggagcaggaacattttcaattgcaccactatcaatgtccttcaaatactcagtgtaagaatgtatagcttcttcttcaa |
37469658 |
T |
|
| Q |
309 |
ggtacccaacaactctatgagccacctttggggaaagtatgtaaagtacaaagaatgcattgaagaaaactccctgtacagcaagaaccagaaatctctc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37469657 |
ggtacccaacaactctatgagccacctttggggaaagtatgtaaagtacaaagaatgcattgaagaaaactccctgtacagcaagaaccagaaatctctc |
37469558 |
T |
|
| Q |
409 |
gtaccatttcggcttcacaagttctaccatagtcattaggtgcatcct |
456 |
Q |
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| T |
37469557 |
gtaccatttcggcttcacaagttctaccatagtcattaggtgcatcct |
37469510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 29931550 - 29931688
Alignment:
| Q |
110 |
acactcactgaagcgaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctcc |
209 |
Q |
| |
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|||||||| ||||| || || || ||||||| ||| |||||||| ||||||||||| || || |||||||| || | | |||||||| ||||| |||| |
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| T |
29931550 |
acactcaccgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctcc |
29931649 |
T |
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| Q |
210 |
aatagtctattgcaatggcaggagcaggaacattttcaa |
248 |
Q |
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|||| || |||||||| ||||||||||| |||||||||| |
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| T |
29931650 |
aataatcaattgcaatagcaggagcaggtacattttcaa |
29931688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 29931775 - 29931838
Alignment:
| Q |
335 |
tttggggaaagtatgtaaagtacaaagaatgcattgaagaaaactccctgtacagcaagaacca |
398 |
Q |
| |
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||||| || |||||||||| |||||||||||||||||||||||||| ||| ||| || ||||| |
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|
| T |
29931775 |
tttggtgagagtatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataacca |
29931838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 29934298 - 29934412
Alignment:
| Q |
134 |
acatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctccaatagtctattgcaatggcaggag |
233 |
Q |
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||||||| ||| |||||||| ||||||||||| || || | |||||| || | | ||||| || ||||| |||||||| || || ||||| ||||||| |
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| T |
29934298 |
acatccctatgatgagcctcatcagcacgaataacagtgacaacatccttaagagttgcatcatttggaagtctccaataatcaatagcaatagcaggag |
29934397 |
T |
|
| Q |
234 |
caggaacattttcaa |
248 |
Q |
| |
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|||| |||||||||| |
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|
| T |
29934398 |
caggtacattttcaa |
29934412 |
T |
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Back To:
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