View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_high_13 (Length: 436)

Name: NF19563_high_13
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_high_13
NF19563_high_13
[»] chr5 (15 HSPs)
chr5 (13-418)||(7667288-7667693)
chr5 (330-369)||(10859889-10859928)
chr5 (311-370)||(42439667-42439726)
chr5 (311-368)||(33608480-33608537)
chr5 (311-386)||(7668091-7668165)
chr5 (330-375)||(1102129-1102174)
chr5 (330-369)||(7328690-7328729)
chr5 (310-369)||(10161802-10161861)
chr5 (311-369)||(12208892-12208951)
chr5 (314-372)||(3970448-3970506)
chr5 (335-368)||(36927734-36927767)
chr5 (311-375)||(1105416-1105480)
chr5 (332-368)||(13224670-13224706)
chr5 (330-370)||(36927891-36927931)
chr5 (330-370)||(38592208-38592248)
[»] chr6 (11 HSPs)
chr6 (314-372)||(6544546-6544604)
chr6 (313-375)||(3524902-3524964)
chr6 (314-370)||(33141756-33141812)
chr6 (311-370)||(1485196-1485254)
chr6 (310-368)||(24974191-24974249)
chr6 (311-369)||(29240502-29240560)
chr6 (311-368)||(6654142-6654198)
chr6 (329-370)||(31305897-31305938)
chr6 (315-356)||(33997179-33997220)
chr6 (337-381)||(201778-201822)
chr6 (329-369)||(6214816-6214856)
[»] chr4 (14 HSPs)
chr4 (312-387)||(29779087-29779161)
chr4 (316-370)||(11271587-11271641)
chr4 (311-370)||(32818420-32818478)
chr4 (314-380)||(2171767-2171832)
chr4 (314-370)||(8330095-8330151)
chr4 (314-370)||(18597019-18597075)
chr4 (311-367)||(25319024-25319080)
chr4 (332-395)||(51093256-51093317)
chr4 (312-370)||(2206393-2206451)
chr4 (332-374)||(24921491-24921533)
chr4 (314-368)||(44845726-44845780)
chr4 (330-368)||(46012662-46012700)
chr4 (330-387)||(32817486-32817542)
chr4 (330-370)||(2206768-2206808)
[»] chr3 (7 HSPs)
chr3 (311-417)||(41115366-41115470)
chr3 (321-370)||(40147900-40147948)
chr3 (311-366)||(7717375-7717429)
chr3 (314-389)||(43987582-43987657)
chr3 (331-369)||(49634090-49634128)
chr3 (327-359)||(20484053-20484085)
chr3 (321-389)||(48411037-48411104)
[»] scaffold0393 (1 HSPs)
scaffold0393 (311-364)||(12362-12415)
[»] chr2 (18 HSPs)
chr2 (333-369)||(6767673-6767709)
chr2 (330-370)||(44439249-44439289)
chr2 (321-368)||(5977167-5977214)
chr2 (311-369)||(11510930-11510988)
chr2 (332-374)||(37402279-37402321)
chr2 (311-372)||(36706377-36706438)
chr2 (314-370)||(3476479-3476535)
chr2 (311-355)||(7629847-7629891)
chr2 (330-381)||(21234564-21234614)
chr2 (311-370)||(22535975-22536033)
chr2 (329-372)||(28028836-28028879)
chr2 (311-354)||(36979124-36979167)
chr2 (329-359)||(33502909-33502939)
chr2 (313-370)||(10618991-10619047)
chr2 (311-360)||(21743810-21743859)
chr2 (317-370)||(37649536-37649589)
chr2 (334-371)||(44810374-44810411)
chr2 (313-349)||(14110656-14110692)
[»] chr7 (5 HSPs)
chr7 (311-369)||(45369139-45369197)
chr7 (310-363)||(45004996-45005048)
chr7 (311-370)||(40422769-40422828)
chr7 (285-354)||(39054046-39054115)
chr7 (330-369)||(21436049-21436089)
[»] chr1 (15 HSPs)
chr1 (311-389)||(28083920-28083996)
chr1 (311-369)||(41516964-41517022)
chr1 (330-387)||(15515103-15515159)
chr1 (318-370)||(12655228-12655280)
chr1 (321-369)||(45661534-45661582)
chr1 (326-389)||(441662-441724)
chr1 (311-370)||(32088623-32088681)
chr1 (310-369)||(51158464-51158523)
chr1 (314-368)||(39731325-39731378)
chr1 (311-360)||(5268195-5268244)
chr1 (314-419)||(48549015-48549117)
chr1 (310-366)||(5407776-5407832)
chr1 (321-369)||(6744821-6744869)
chr1 (334-370)||(33693020-33693056)
chr1 (336-368)||(34570977-34571009)
[»] chr8 (4 HSPs)
chr8 (311-369)||(13929756-13929815)
chr8 (316-368)||(11038164-11038216)
chr8 (314-366)||(32056344-32056396)
chr8 (341-369)||(37499049-37499077)


Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 7667288 - 7667693
Alignment:
Q  13 atactatcaaaagatacatcttaaaagcgtacgaaccacttaatggatgtgtatgtttggattgaccgtgagtttggtggaatttcagagtgcccctgtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7667288 atactatcaaaagatacatcttaaaagcgtacgaaccacttaatggatgtgtatgtttggattgaccgtgagtttggtggaatttcagagtgcccctgtg 7667387  T
Q  113 attttttagccaaagctacactttatagcttcaacagagtcaagacgtcacactgattttgtcaaacttaccgtcaatccatacactgactaaactaaga 212  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7667388 attttttagccaaagctacactttggagcttcaacagagtcaagacgtcacactgattttgtcaaactcaccgtcaatccatacactgactaaactaaga 7667487  T
Q  213 aacaaaagaaaacaaacacaacttatccatccatcaattcacaacacattgcatatttcattccacttttgaatgagtcaaaattcattatagaggcata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7667488 aacaaaagaaaacaaacacaacttatccatccatcaattcacaacacattgcatatttcattccacttttgaatgagtcaaaattcattatagaggcata 7667587  T
Q  313 gaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttttaacctttacttattgtttaactca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7667588 gaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttttaacctttacttattgtttaactca 7667687  T
Q  413 ctttta 418  Q
    ||||||    
T  7667688 ctttta 7667693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 10859928 - 10859889
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttg 369  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10859928 agaattgattctaacttgaagctagaatttggagcttttg 10859889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 42439726 - 42439667
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||| || |||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttga 42439667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 33608480 - 33608537
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagctttt 368  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  33608480 tagaattggttttgccttgagaattgattctaacttgaagctagaagttggagttttt 33608537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 7668091 - 7668165
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaattt 386  Q
    ||||||||| ||||||| |||||| ||||| |||||| |||||||||||| |||||||| ||| | ||||||||||    
T  7668091 tagaattgaatttgcctccagaat-gattccaacttgtagctagaatttgaagcttttgccttatacaattaattt 7668165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 1102129 - 1102174
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttgacttct 375  Q
    |||||||||| |||||||||||||| ||||| ||||||||||||||    
T  1102129 agaattgattttaacttgaagctaggatttgtagcttttgacttct 1102174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 7328729 - 7328690
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttg 369  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  7328729 agaattgattctaacttgaagctagaatttgaaacttttg 7328690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 10161802 - 10161861
Alignment:
Q  310 atagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    ||||||||||||||||||  ||||||||||||||| || ||||| ||||| ||| |||||    
T  10161802 atagaattgactttgcctctagaattgattctaacatgcagctacaatttagagtttttg 10161861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 12208951 - 12208892
Alignment:
Q  311 tagaattgactttgcctt-cagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    |||||||| ||||||||| | ||||||| |||||| ||||||||||||||| ||||||||    
T  12208951 tagaattgtctttgccttacggaattgactctaacgtgaagctagaatttgcagcttttg 12208892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 3970506 - 3970448
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgact 372  Q
    |||||| ||||||| |||||||||||||||  ||||||||| | ||| |||||||||||    
T  3970506 aattgattttgcctccagaattgattctaatctgaagctaggaattgtagcttttgact 3970448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 36927734 - 36927767
Alignment:
Q  335 tgattctaacttgaagctagaatttggagctttt 368  Q
    ||||||||||||||||||||||||| ||||||||    
T  36927734 tgattctaacttgaagctagaatttagagctttt 36927767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 1105416 - 1105480
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttct 375  Q
    ||||||||| ||||| |||| |||||||| ||||| |||| ||  ||||| ||||||||||||||    
T  1105416 tagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttct 1105480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 13224706 - 13224670
Alignment:
Q  332 aattgattctaacttgaagctagaatttggagctttt 368  Q
    |||| |||| |||||||||||||||||||||||||||    
T  13224706 aattcattcaaacttgaagctagaatttggagctttt 13224670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 36927891 - 36927931
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||||||| ||  ||||||||||||||||||||||||||    
T  36927891 agaattgattatatattgaagctagaatttggagcttttga 36927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 38592208 - 38592248
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||||||||||| ||||||| |||||||| |||||||||    
T  38592208 agaattgattctaatttgaagccagaatttgtagcttttga 38592248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 6544604 - 6544546
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgact 372  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  6544604 aattgattttgccttcagaattgattctaacttgaagctagaactcggagcttttgact 6544546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 3524902 - 3524964
Alignment:
Q  313 gaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttct 375  Q
    ||||||| |||||||| |||||| |||||||||| ||||||||||||| || ||||| |||||    
T  3524902 gaattgattttgcctttagaattaattctaactttaagctagaatttgtagtttttggcttct 3524964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 33141812 - 33141756
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||| ||| ||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  33141812 aattgattttacctccagaattgattctaactagaacctagaatttgaagcttttga 33141756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 1485254 - 1485196
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||| | |||||||| ||||||||||||| |||||| |||||| |||||||||||||    
T  1485254 tagaattaattttgcctttagaattgattcta-cttgaatctagaaattggagcttttga 1485196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 24974191 - 24974249
Alignment:
Q  310 atagaattgactttgccttcagaattgattctaacttgaagctagaatttggagctttt 368  Q
    |||||||||| ||||||| || ||||||||||||| |||||| ||||||| ||| ||||    
T  24974191 atagaattgattttgcctccaaaattgattctaacatgaagcgagaatttagagttttt 24974249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 29240560 - 29240502
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    ||||||||| ||| ||| |||| |||||||||||||||||||| |||||| || |||||    
T  29240560 tagaattgattttacctccagagttgattctaacttgaagctaaaatttgaagtttttg 29240502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 6654198 - 6654142
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagctttt 368  Q
    ||||||||| ||| ||||||||||| ||||| |||||||||||| ||||| |||||||    
T  6654198 tagaattgatttttccttcagaattaattct-acttgaagctaggatttgtagctttt 6654142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 31305938 - 31305897
Alignment:
Q  329 cagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||| ||||||||||||||||||| || |||||||||||||    
T  31305938 cagaactgattctaacttgaagctaaaaattggagcttttga 31305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 33997179 - 33997220
Alignment:
Q  315 attgactttgccttcagaattgattctaacttgaagctagaa 356  Q
    ||||| |||||||||| |||||||||||||||||||| ||||    
T  33997179 attgattttgccttcacaattgattctaacttgaagcaagaa 33997220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 201778 - 201822
Alignment:
Q  337 attctaacttgaagctagaatttggagcttttgacttctgcaatt 381  Q
    ||||||||||||||||| |||||| | |||||||||||| |||||    
T  201778 attctaacttgaagctaaaatttgtatcttttgacttctacaatt 201822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 6214856 - 6214816
Alignment:
Q  329 cagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    |||||| |||||||||||||||||||| |||||| ||||||    
T  6214856 cagaatcgattctaacttgaagctagagtttggaacttttg 6214816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 387
Target Start/End: Complemental strand, 29779161 - 29779087
Alignment:
Q  312 agaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttt 387  Q
    |||||||| ||||| |  ||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||    
T  29779161 agaattgattttgcttgtagaattgattcta-cttgaagctagaatttgtagcttttcacttctgcaattgatttt 29779087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 11271641 - 11271587
Alignment:
Q  316 ttgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttga 11271587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 32818478 - 32818420
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||| ||||||| ||||||||||||| | |||||||||||||||| |||||||||    
T  32818478 tagaattgattttgcctccagaattgattct-atttgaagctagaatttgtagcttttga 32818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 2171767 - 2171832
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaat 380  Q
    |||||||||||||  | |||||||||| ||||||||||||||||||||  |||||| ||||||||||    
T  2171767 aattgactttgcccccggaattgattcgaacttgaagctagaatttgggacttttg-cttctgcaat 2171832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 8330095 - 8330151
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||| | ||||| || ||| ||||||||||||||||||||| |||||||||||||    
T  8330095 aattgattctgcctccataatggattctaacttgaagctagaaattggagcttttga 8330151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 18597019 - 18597075
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||| ||| ||| ||||||||||||||||||||||||| |||||| | |||||||    
T  18597019 aattgattttacctccagaattgattctaacttgaagctataatttgaaccttttga 18597075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 25319024 - 25319080
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttt 367  Q
    ||||||||| |||| || |||||||||||||||||||||| ||| ||||| ||||||    
T  25319024 tagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 51093256 - 51093317
Alignment:
Q  332 aattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttttaaccttt 395  Q
    |||||||||||||| ||||||||||||||||||||||| | ||| ||||| ||||||| |||||    
T  51093256 aattgattctaact-gaagctagaatttggagcttttg-cctctacaattgatttttagccttt 51093317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 2206451 - 2206393
Alignment:
Q  312 agaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||||| ||| ||| || ||||||||||| |||||||||| || |||||||||||||    
T  2206451 agaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagcttttga 2206393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 374
Target Start/End: Complemental strand, 24921533 - 24921491
Alignment:
Q  332 aattgattctaacttgaagctagaatttggagcttttgacttc 374  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  24921533 aattgattctaacttgaaacttgaatttgtagcttttgacttc 24921491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 44845726 - 44845780
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagctttt 368  Q
    |||||| ||| ||| ||||||||||||||||||||||| | |||||| |||||||    
T  44845726 aattgatttttcctccagaattgattctaacttgaagcaataatttgtagctttt 44845780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 46012700 - 46012662
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagctttt 368  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  46012700 agaattgattctaacttgaagctagaatttacagctttt 46012662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 32817542 - 32817486
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttt 387  Q
    ||||||||||||| ||||| ||||||||||| ||||||| |||||| ||||| |||||    
T  32817542 agaattgattcta-cttgaggctagaatttgtagctttttacttctacaattgatttt 32817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 2206808 - 2206768
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||||||||||||||| ||||| || |||||||||||||    
T  2206808 agaattgattctaacttgcagctaaaaattggagcttttga 2206768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 41115470 - 41115366
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttttaacctttacttattgtttaact 410  Q
    ||||||||| ||||| |  ||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| | |||||||||| | ||| |||| || |    
T  41115470 tagaattgattttgcttgtagaattgattcta-cttgaagctagaatttgtagcttttggcttctacaattga-ttttaaccttgatttactgttcaaat 41115373  T
Q  411 cactttt 417  Q
    |||||||    
T  41115372 cactttt 41115366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 40147948 - 40147900
Alignment:
Q  321 tttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  40147948 tttgtcttcagaattgattcta-cttcaagctagaatttggagcttttga 40147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 7717429 - 7717375
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagctt 366  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||| ||| |||||    
T  7717429 tagaattgattttgcctccagaattgattct-acttgaagctagaaattgtagctt 7717375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 43987657 - 43987582
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaattttta 389  Q
    |||||| |||| || ||||||  ||||||||| |||||||||||||| || |||||||| || ||||| |||||||    
T  43987657 aattgattttgtctacagaatcaattctaactggaagctagaatttgtagtttttgactcctacaattgattttta 43987582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 49634128 - 49634090
Alignment:
Q  331 gaattgattctaacttgaagctagaatttggagcttttg 369  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  49634128 gaattgattctaacttgaagctaggatttgtagcttttg 49634090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 20484085 - 20484053
Alignment:
Q  327 ttcagaattgattctaacttgaagctagaattt 359  Q
    ||||||||||||||||| |||||||||||||||    
T  20484085 ttcagaattgattctaatttgaagctagaattt 20484053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 48411037 - 48411104
Alignment:
Q  321 tttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaattttta 389  Q
    |||||||  ||||||||||||||||||||| || ||||| | |||||||| |||| |||||||| ||||    
T  48411037 tttgcctctagaattgattctaacttgaagttaaaattttgtgcttttga-ttctacaattaatattta 48411104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 12415 - 12362
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagc 364  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  12415 tagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 12362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 6767673 - 6767709
Alignment:
Q  333 attgattctaacttgaagctagaatttggagcttttg 369  Q
    |||||||||||||||||||||||||||||||||||||    
T  6767673 attgattctaacttgaagctagaatttggagcttttg 6767709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 44439249 - 44439289
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  44439249 agaattgattctaacttgaagctaaaatttggagcttttga 44439289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 5977167 - 5977214
Alignment:
Q  321 tttgccttcagaattgattctaacttgaagctagaatttggagctttt 368  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||||    
T  5977167 tttgcctccataattgattctaacttgaagctaaaatttggagctttt 5977214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 11510930 - 11510988
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    ||||||||| ||||||| || | ||||||||| |||||||||||||||||||| |||||    
T  11510930 tagaattgattttgcctccatatttgattctatcttgaagctagaatttggagtttttg 11510988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 374
Target Start/End: Complemental strand, 37402321 - 37402279
Alignment:
Q  332 aattgattctaacttgaagctagaatttggagcttttgacttc 374  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  37402321 aattgactctaacttgaagctagaatttgtagcttttgacttc 37402279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 36706438 - 36706377
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgact 372  Q
    ||||||||| ||||| || ||||||||||||| ||||| ||||||||||| |||||| ||||    
T  36706438 tagaattgattttgcttttagaattgattctagcttgatgctagaatttgtagctttagact 36706377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 3476535 - 3476479
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    |||||| ||||||| |||||||||||||||||| |||||| || || ||||||||||    
T  3476535 aattgattttgcctccagaattgattctaacttaaagctaaaaattagagcttttga 3476479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 7629847 - 7629891
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctaga 355  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||    
T  7629847 tagaattcacttttcctccagaattgattctaacttgaagctaga 7629891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 21234614 - 21234564
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttgacttctgcaatt 381  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  21234614 agaattgattcta-cttgaagctagaatttgtagcttttggcttctacaatt 21234564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 22535975 - 22536033
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||| |||||||| |||||||||||| |||||||  ||||||||| |||||||||    
T  22535975 tagaattgattttgcctttagaattgattct-acttgaatttagaatttgaagcttttga 22536033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 28028836 - 28028879
Alignment:
Q  329 cagaattgattctaacttgaagctagaatttggagcttttgact 372  Q
    ||||||||| | |||||||||||||||||||| |||||||||||    
T  28028836 cagaattgactataacttgaagctagaatttgtagcttttgact 28028879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 36979124 - 36979167
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctag 354  Q
    ||||||| | |||||||||||||||||| |||||||||||||||    
T  36979124 tagaatttattttgccttcagaattgatactaacttgaagctag 36979167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 33502939 - 33502909
Alignment:
Q  329 cagaattgattctaacttgaagctagaattt 359  Q
    |||||||||||||||||||||||||||||||    
T  33502939 cagaattgattctaacttgaagctagaattt 33502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 10619047 - 10618991
Alignment:
Q  313 gaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||| |||||||| |||||||||||| | |||||||||||| || ||||||||||    
T  10619047 gaattgattttgcctttagaattgattct-agttgaagctagaaattagagcttttga 10618991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 21743859 - 21743810
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttg 360  Q
    ||||||||| |||||||| ||| |||||||| | ||||||||||||||||    
T  21743859 tagaattgattttgcctttagacttgattcttagttgaagctagaatttg 21743810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 37649589 - 37649536
Alignment:
Q  317 tgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||||| | |||||||||||||||| |||| |||| ||| |||||||||    
T  37649589 tgactttgcctccggaattgattctaacttaaagcaagaaattgaagcttttga 37649536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 44810374 - 44810411
Alignment:
Q  334 ttgattctaacttgaagctagaatttggagcttttgac 371  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  44810374 ttgattctaacttgaagctaggatttgtagcttttgac 44810411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 14110656 - 14110692
Alignment:
Q  313 gaattgactttgccttcagaattgattctaacttgaa 349  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  14110656 gaattgaatttgcctttagaattgattctaacttgaa 14110692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 45369139 - 45369197
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    ||||||||| ||||| |  |||||||||| |||||||||||||||||| ||||||||||    
T  45369139 tagaattgattttgcttctagaattgattttaacttgaagctagaattcggagcttttg 45369197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 45004996 - 45005048
Alignment:
Q  310 atagaattgactttgccttcagaattgattctaacttgaagctagaatttggag 363  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| || ||||||    
T  45004996 atagaattgattttgccttcagaattgattct-acttgaagctaaaaattggag 45005048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 40422769 - 40422828
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||| |||||||  ||||||||||||||||||||| ||| |||||  ||||||||    
T  40422769 tagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 39054046 - 39054115
Alignment:
Q  285 atgagtcaaaattcattatagaggcatagaattgactttgccttcagaattgattctaacttgaagctag 354  Q
    |||||||||||||  || ||||||  ||||||||| |||| ||  |||||||||||||||| ||||||||    
T  39054046 atgagtcaaaattgtttctagaggtttagaattgattttgtctctagaattgattctaactcgaagctag 39054115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 21436089 - 21436049
Alignment:
Q  330 agaattgattctaacttgaagctagaa-tttggagcttttg 369  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  21436089 agaattgattttaacttgaagctagaattttggagcttttg 21436049  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 28083996 - 28083920
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaattttta 389  Q
    ||||||||| |||| ||||  ||||||||||| ||||||||||||||||| ||||||||| ||||  ||||||||||||    
T  28083996 tagaattgattttgtcttcgtaattgattcta-cttgaagctagaatttgtagcttttga-ttctataattaattttta 28083920  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 41516964 - 41517022
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    ||||||||| ||||| || | ||||||||||||||||||| |||||||||||| |||||    
T  41516964 tagaattgattttgcgtttaaaattgattctaacttgaagttagaatttggagtttttg 41517022  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 15515159 - 15515103
Alignment:
Q  330 agaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttt 387  Q
    ||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||||    
T  15515159 agaattgattcta-catgaagctagaatttgtaggttttggcttctgcaattaatttt 15515103  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 12655228 - 12655280
Alignment:
Q  318 gactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||||  |||||| |||||||||||||||||||||||| ||| |||||    
T  12655228 gactttgcctctagaattaattctaacttgaagctagaatttgtagcatttga 12655280  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 45661534 - 45661582
Alignment:
Q  321 tttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    |||| ||| ||||||||||||||||||||| || |||||||||||||||    
T  45661534 tttgtcttgagaattgattctaacttgaagttaaaatttggagcttttg 45661582  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 441724 - 441662
Alignment:
Q  326 cttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaattttta 389  Q
    ||||||||||||||||||||| ||||||||||||  || ||||| ||||| ||||| |||||||    
T  441724 cttcagaattgattctaacttaaagctagaatttatag-ttttggcttctacaattgattttta 441662  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 32088681 - 32088623
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||| ||| ||| || ||||||||||||||||||||||| |||| ||||||||||    
T  32088681 tagaattgatttt-cctacaaaattgattctaacttgaagctaggatttcgagcttttga 32088623  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Complemental strand, 51158523 - 51158464
Alignment:
Q  310 atagaattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    |||||||||| ||||||| ||| ||| ||| ||||||||||  |||||||||||||||||    
T  51158523 atagaattgattttgcctccaggatttattttaacttgaagaaagaatttggagcttttg 51158464  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 39731378 - 39731325
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagctttt 368  Q
    |||||| |||||||||| |||||||||||||| | ||||||| ||||||||||||    
T  39731378 aattgattttgccttcaaaattgattctaactag-agctagagtttggagctttt 39731325  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 5268195 - 5268244
Alignment:
Q  311 tagaattgactttgccttcagaattgattctaacttgaagctagaatttg 360  Q
    ||||||| | ||||||| || |||||||||||||| ||||||||||||||    
T  5268195 tagaattaattttgcctccaaaattgattctaactcgaagctagaatttg 5268244  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 419
Target Start/End: Complemental strand, 48549117 - 48549015
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagcttttgacttctgcaattaatttttaacctttacttattgtttaactcac 413  Q
    |||| ||||||||| || ||||||||||| ||||||||||||| ||| ||||| ||| ||||  |||| |||||||| ||  | |||||||| |||||||    
T  48549117 aattaactttgcctccaaaattgattcta-cttgaagctagaaattgtagcttctga-ttctagaattgatttttaaactc-atttattgttcaactcac 48549021  T
Q  414 ttttac 419  Q
    ||||||    
T  48549020 ttttac 48549015  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 5407776 - 5407832
Alignment:
Q  310 atagaattgactttgccttcagaattgattctaacttgaagctagaatttggagctt 366  Q
    |||||||||| ||||||| ||||  | |||||||||||||||||| ||||| |||||    
T  5407776 atagaattgattttgcctgcagagataattctaacttgaagctaggatttgtagctt 5407832  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 6744821 - 6744869
Alignment:
Q  321 tttgccttcagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    |||| |||||||||||||| || ||||||||||||||||| || |||||    
T  6744821 tttgacttcagaattgattatagcttgaagctagaatttgaagtttttg 6744869  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 33693020 - 33693056
Alignment:
Q  334 ttgattctaacttgaagctagaatttggagcttttga 370  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  33693020 ttgattctaacttgaagctagaaattgtagcttttga 33693056  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 34571009 - 34570977
Alignment:
Q  336 gattctaacttgaagctagaatttggagctttt 368  Q
    |||||||||||||||||| ||||||||||||||    
T  34571009 gattctaacttgaagctataatttggagctttt 34570977  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 13929815 - 13929756
Alignment:
Q  311 tagaattgactttgcctt-cagaattgattctaacttgaagctagaatttggagcttttg 369  Q
    |||||||| ||||||||| | ||||||| |||||| ||||||||||||||| ||||||||    
T  13929815 tagaattgtctttgccttacggaattgactctaacgtgaagctagaatttgcagcttttg 13929756  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 11038164 - 11038216
Alignment:
Q  316 ttgactttgccttcagaattgattctaacttgaagctagaatttggagctttt 368  Q
    |||| ||| ||| |||| |||||||||||||||||||| ||||||||| ||||    
T  11038164 ttgatttttcctccagagttgattctaacttgaagctaaaatttggaggtttt 11038216  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 32056344 - 32056396
Alignment:
Q  314 aattgactttgccttcagaattgattctaacttgaagctagaatttggagctt 366  Q
    |||||| ||| ||| || ||||||||||||||| ||||||||| |||||||||    
T  32056344 aattgattttacctccataattgattctaactttaagctagaaattggagctt 32056396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 37499077 - 37499049
Alignment:
Q  341 taacttgaagctagaatttggagcttttg 369  Q
    |||||||||||||||||||||||||||||    
T  37499077 taacttgaagctagaatttggagcttttg 37499049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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