View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_high_18 (Length: 400)
Name: NF19563_high_18
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 11585765 - 11585417
Alignment:
| Q |
16 |
tgttgtactatattttgatagttttcaagggttgggtgttggttggagggttaggtta---------atgannnnnnnctttgtcgggggataccatctt |
106 |
Q |
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| T |
11585765 |
tgttgtactacattttgatagttttcaagggttgggtgttggttggagggttaggttagctcttgaaatgatttttt-ctttgtcgagggataccatctt |
11585667 |
T |
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| Q |
107 |
tcaagtatatggtggaaatggtgaaattcactttttggaaattattcttgagtaagaaccctagtagcatattcttctcctataagtgtgaagtgaagcc |
206 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
11585666 |
tcaagtatatgatggaaatggtgaaattcactttttggaaattattcttgagtaagaaccctagtagcatatgcttctcctataagtgtgaaatgaagcc |
11585567 |
T |
|
| Q |
207 |
tactatatgctttagccgataggtttcttttgggtgttggagaggggtgtcaatagccttgtcggacctgttgtttgctcttgaccggctccctcacggt |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11585566 |
tactatgtgctttagccgataggtttcttttgggtgttggagaggggtgtcgatggccttgtcggacctgttgtttgctcttgaccggctccctcacagt |
11585467 |
T |
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| Q |
307 |
gtctcacctttcctcatttttgtcgtgggctagtcatcggtatatgttct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11585466 |
gtctcacctttcctcatttttgtcgtgggctagtcatcagtatatgttct |
11585417 |
T |
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