View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_high_27 (Length: 342)

Name: NF19563_high_27
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_high_27
NF19563_high_27
[»] chr2 (10 HSPs)
chr2 (1-342)||(11292077-11292411)
chr2 (237-327)||(12130667-12130759)
chr2 (261-325)||(13109900-13109964)
chr2 (237-305)||(88625-88695)
chr2 (237-304)||(1418033-1418102)
chr2 (261-342)||(34695918-34695999)
chr2 (261-342)||(34718330-34718411)
chr2 (261-305)||(22845628-22845672)
chr2 (265-305)||(26198778-26198818)
chr2 (262-326)||(14827173-14827237)
[»] chr4 (15 HSPs)
chr4 (261-342)||(51259543-51259624)
chr4 (262-327)||(49951406-49951471)
chr4 (262-342)||(29655680-29655760)
chr4 (237-342)||(28537801-28537908)
chr4 (271-327)||(55735111-55735167)
chr4 (262-341)||(24989948-24990027)
chr4 (262-327)||(47226359-47226424)
chr4 (261-309)||(56065721-56065769)
chr4 (263-326)||(43840336-43840399)
chr4 (243-326)||(41835341-41835426)
chr4 (261-326)||(2064945-2065010)
chr4 (261-342)||(44936096-44936177)
chr4 (261-297)||(21321619-21321655)
chr4 (262-327)||(51735001-51735066)
chr4 (167-203)||(16552883-16552919)
[»] chr7 (9 HSPs)
chr7 (262-327)||(16732026-16732091)
chr7 (262-327)||(17710160-17710225)
chr7 (261-342)||(30493624-30493705)
chr7 (261-327)||(16098582-16098648)
chr7 (264-342)||(22289336-22289414)
chr7 (261-342)||(3275126-3275207)
chr7 (261-327)||(29200984-29201050)
chr7 (261-342)||(3601744-3601825)
chr7 (155-200)||(38754193-38754238)
[»] chr5 (12 HSPs)
chr5 (261-326)||(4268191-4268256)
chr5 (262-342)||(20205048-20205128)
chr5 (261-342)||(26597471-26597552)
chr5 (261-342)||(8388178-8388259)
chr5 (262-342)||(25730901-25730981)
chr5 (243-326)||(11375543-11375628)
chr5 (271-327)||(12660418-12660474)
chr5 (261-326)||(15988779-15988844)
chr5 (261-342)||(34652268-34652349)
chr5 (261-325)||(27292526-27292590)
chr5 (261-305)||(41940788-41940832)
chr5 (261-327)||(32632607-32632673)
[»] chr1 (12 HSPs)
chr1 (261-326)||(44527345-44527410)
chr1 (261-326)||(2885315-2885380)
chr1 (284-342)||(44602867-44602925)
chr1 (261-326)||(51113407-51113472)
chr1 (237-305)||(4395224-4395294)
chr1 (261-327)||(5609431-5609497)
chr1 (261-342)||(36733788-36733869)
chr1 (261-326)||(48949754-48949819)
chr1 (235-303)||(16816853-16816923)
chr1 (267-341)||(21031247-21031321)
chr1 (261-326)||(52109545-52109610)
chr1 (158-202)||(10105680-10105724)
[»] chr8 (7 HSPs)
chr8 (262-327)||(23854025-23854090)
chr8 (261-326)||(40588760-40588825)
chr8 (261-327)||(33642793-33642859)
chr8 (261-342)||(8451137-8451218)
chr8 (262-326)||(13415116-13415180)
chr8 (237-327)||(185620-185712)
chr8 (261-326)||(598267-598332)
[»] chr3 (9 HSPs)
chr3 (261-326)||(53497124-53497189)
chr3 (262-305)||(48227507-48227550)
chr3 (261-326)||(27608933-27608998)
chr3 (261-326)||(34497402-34497467)
chr3 (266-326)||(647193-647253)
chr3 (262-327)||(2615576-2615641)
chr3 (262-327)||(42340306-42340371)
chr3 (261-326)||(24176862-24176927)
chr3 (261-326)||(55199603-55199668)
[»] chr6 (6 HSPs)
chr6 (242-328)||(14680233-14680321)
chr6 (261-326)||(15053205-15053270)
chr6 (262-342)||(28107232-28107312)
chr6 (261-305)||(15606045-15606089)
chr6 (271-314)||(29368098-29368141)
chr6 (261-305)||(30802042-30802086)
[»] scaffold0922 (1 HSPs)
scaffold0922 (271-309)||(311-349)
[»] scaffold0446 (1 HSPs)
scaffold0446 (261-309)||(278-326)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 11292411 - 11292077
Alignment:
Q  1 tcttgtagattgagagaagaagcacaaagaggtagcaattagggtttattgttgaagctaatttcttgtgagtatcacttgcaaagactttgttatgtat 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11292411 tcttgtagattgagagaagaagcacaaagaggtagcaatcagggtttattgttgaagctaatttcttgtgagtatcacttgcaaagactttgttatgtat 11292312  T
Q  101 ctgctccctcccatacgctaatgaatttaggccgaattgattaagaaatattggtgtatttgttcttttactctctttatctttgttctttgatttgatt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11292311 ctgctctctcccatacgctaatgaatttaggccgaattgattaagaaatattggtgtatttgttcttttactctctttgtctttgttctttgatttgatt 11292212  T
Q  201 gtggannnnnnnnnnnatacaattacgtttctggattttgttgatgcaaatagatggaacggttgtctttgagtccgactcatctactctagtgcaagct 300  Q
    |||||           ||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11292211 gtgga-ttttttttttatacaa-----attctggattttgttgatgcaaatagatggaacggttgtctttgagtccgactcatctactctagtgcaagct 11292118  T
Q  301 ctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||| | ||| |||||||||||||||| |||||||||||||    
T  11292117 ctatcgttttc-ggccatgatgattcaaaattttatgttatt 11292077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 12130759 - 12130667
Alignment:
Q  237 tttgttgatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||| ||||||||||||||||||   |||| |||| ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||    
T  12130759 tttgctgatgcaaatagatggaatcgggttatcttcgagtctgactcatctactctagtccaagctctatcatcttcgggacatggtgattca 12130667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 13109964 - 13109900
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgatt 325  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||    
T  13109964 ggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccatggtgatt 13109900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 88625 - 88695
Alignment:
Q  237 tttgttgatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    ||||||||||| || |||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  88625 tttgttgatgctaacagatgggaccgggttgtcttcgagtccgactcatctactctagtgcaagctctatc 88695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 1418102 - 1418033
Alignment:
Q  237 tttgttgatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctat 304  Q
    |||| ||||||||| |||||| ||  ||||||||| ||||| ||||||||||||||||| ||||||||||    
T  1418102 tttgctgatgcaaacagatgggactgggttgtcttcgagtctgactcatctactctagttcaagctctat 1418033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 34695999 - 34695918
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| |||||||||||  ||||||||||||||||  |||| ||| |||| |||| |||||||  |||||||| ||||    
T  34695999 ggttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctatt 34695918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 34718411 - 34718330
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| |||||||||||  ||||||||||||||||  |||| ||| |||| |||| |||||||  |||||||| ||||    
T  34718411 ggttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctatt 34718330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 22845628 - 22845672
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||||    
T  22845628 ggttgtcttcgagtccaactaatctactctagtgcaagctctatc 22845672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 26198778 - 26198818
Alignment:
Q  265 gtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  26198778 gtcttcgagtccgactcagctactctagtgcaagctctatc 26198818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 14827173 - 14827237
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||||| || |||| | |||||||||||||||||||||| | || ||| |||| ||||||    
T  14827173 gttgtctttgaatctgacttagctactctagtgcaagctctatcgtgtttgggtcatggtgattc 14827237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 51259624 - 51259543
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||||  |||||||||||||    
T  51259624 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttatt 51259543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 49951406 - 49951471
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||    
T  49951406 gttgtcttcgagtccgactcgtctactctagtgcaagctttatcatcttcgggccgtggtgattca 49951471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 29655760 - 29655680
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||||| ||||| ||||   |||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||    
T  29655760 gttgtcttcgagtctgactacgctactctagtgcaagctctatcatcttcgggccatggtgattcagaattctatgttatt 29655680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 28537908 - 28537801
Alignment:
Q  237 tttgttgatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagatttt 334  Q
    ||||||||||| || |||||| ||  |||||| ||  ||||||||||||||||| |||||||||||||||| |||  |||||||| |||||||| ||| |    
T  28537908 tttgttgatgcgaacagatgggaccgggttgtgttcaagtccgactcatctactttagtgcaagctctatcgtctctgggccatggtgattcaaaattct 28537809  T
Q  335 atgttatt 342  Q
    ||| ||||    
T  28537808 atgctatt 28537801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 55735111 - 55735167
Alignment:
Q  271 gagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  55735111 gagtccgattcatctactctagtgcaagctctatcgtcttcggaccatggtgattca 55735167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 24990027 - 24989948
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttat 341  Q
    |||||||||||||| |||||| |||||||||||||||||||| | |||  |||||| | |||||||| ||| ||||||||    
T  24990027 gttgtctttgagtctgactcagctactctagtgcaagctctaccgtctctgggccacggtgattcaaaattctatgttat 24989948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 47226424 - 47226359
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||| || |||||||||||||||||| ||| |||||||||||| ||||| ||||||| |||||||    
T  47226424 gttgtgttcgagtccgactcatctactttagagcaagctctatcgtcttcaggccatggtgattca 47226359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 56065721 - 56065769
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatct 309  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  56065721 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatct 56065769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 43840399 - 43840336
Alignment:
Q  263 ttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||| |||| ||||||| |||||||| ||||||||||||| ||||||| ||||| ||||||    
T  43840399 ttgtcttcgagttcgactcagctactctaatgcaagctctatcgtcttcggaccatggtgattc 43840336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 41835426 - 41835341
Alignment:
Q  243 gatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    |||||||| |||||| ||  ||||||||| |||| ||| |||||||||||||||||| | ||||| ||| ||||||||| ||||||    
T  41835426 gatgcaaacagatgggaccgggttgtcttcgagttcgattcatctactctagtgcaaacgctatcgtctccgggccatggtgattc 41835341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 2064945 - 2065010
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||| ||| | || |||| ||||||    
T  2064945 ggttgtctttgagtcggactcatctactctagcccaagctctatcgtctccaggtcatggtgattc 2065010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 44936177 - 44936096
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||| || ||||||||||||| ||||||||||||| ||||||| | ||||||||| | ||||| |  ||| |||||||||    
T  44936177 ggttgtgttcgagtccgactcatttactctagtgcaaactctatcgttttcgggccacggtgatttagaattctatgttatt 44936096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 21321619 - 21321655
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaa 297  Q
    ||||||||| |||||||||||||||||||||||||||    
T  21321619 ggttgtcttcgagtccgactcatctactctagtgcaa 21321655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 51735066 - 51735001
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||| |||  || ||||| |||||||    
T  51735066 gttgtcttcgagtcaggctcctctactctagtgcaagctctatcgtctctggaccatggtgattca 51735001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 16552919 - 16552883
Alignment:
Q  167 tttactctctttatctttgttctttgatttgattgtg 203  Q
    |||||||| | ||||||||||||||||||||||||||    
T  16552919 tttactctatgtatctttgttctttgatttgattgtg 16552883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 16732026 - 16732091
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  16732026 gttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattca 16732091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 17710160 - 17710225
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  17710160 gttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattca 17710225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 30493705 - 30493624
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||  |||||||| ||||    
T  30493705 ggttgtcttcgagtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatgctatt 30493624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 16098582 - 16098648
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||||||| ||||||||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||    
T  16098582 ggttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattca 16098648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 22289336 - 22289414
Alignment:
Q  264 tgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||| |||||||||||| |||||||||||||||| ||||| ||| ||||||||| |||||||  |||||||| ||||    
T  22289336 tgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctatt 22289414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 3275126 - 3275207
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||   ||||| |||||||||  |||||||| ||||    
T  3275126 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctctaggccacgatgattcataattttatgctatt 3275207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 29201050 - 29200984
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||| |||  |||||||| |||||||    
T  29201050 ggttgtcttcgagtctgactcagctactctagtgcaagctctatcgtctctgggccatggtgattca 29200984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 3601744 - 3601825
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||| || |||||||||||||||||||||||||||||| |||| |||  || ||||| |||||||  |||||||| ||||    
T  3601744 ggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctatt 3601825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 38754193 - 38754238
Alignment:
Q  155 tgtatttgttcttttactctctttatctttgttctttgatttgatt 200  Q
    ||||||||||| | |||||||||||| ||||||||||| |||||||    
T  38754193 tgtatttgttcatctactctctttatttttgttctttgttttgatt 38754238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 4268191 - 4268256
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  4268191 ggttttcttcgagtccgactcatctactctagtgcaagctctatcatctccgggccatggtgattc 4268256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 20205048 - 20205128
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||| ||| |||| ||||    
T  20205048 gttgtcttcgagtccgactcatctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctatt 20205128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 26597552 - 26597471
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| ||| ||||||||| ||||||   |||||||||||||    
T  26597552 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgttatt 26597471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 8388178 - 8388259
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| ||| | ||||||| |||||||  |||||||| ||||    
T  8388178 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatgctatt 8388259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 25730901 - 25730981
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||  ||| |||| ||||| |  ||| |||||||||    
T  25730901 gttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattctatgttatt 25730981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 11375628 - 11375543
Alignment:
Q  243 gatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    |||||||||| |||| ||  ||||||||||||||| || ||||||| |||||||||||||||||| ||| ||| ||||| ||||||    
T  11375628 gatgcaaatatatgggaccgggttgtctttgagtctgattcatctattctagtgcaagctctatcgtctccggtccatggtgattc 11375543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 12660418 - 12660474
Alignment:
Q  271 gagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||| |||||| |||||||||||||||||||||| ||||||||||| | |||||||    
T  12660418 gagtctgactcagctactctagtgcaagctctatcgtcttcgggccacggtgattca 12660474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 15988844 - 15988779
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    |||||||||  |||||| |||| |||||||||||||| ||||||| ||||| ||||||| ||||||    
T  15988844 ggttgtcttcaagtccgtctcagctactctagtgcaatctctatcgtcttcaggccatggtgattc 15988779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 34652349 - 34652268
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| ||| |||||||  |||||||||||||||||||| | |||  |||||||| |||||||  ||| |||||||||    
T  34652349 ggttgtcttcgagcccgactcgactactctagtgcaagctctaccgtctctgggccatggtgattcagaattatatgttatt 34652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 27292526 - 27292590
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgatt 325  Q
    ||||||||| |||| |||||||||| ||||||||||| ||||||| ||| | ||||||| |||||    
T  27292526 ggttgtcttcgagttcgactcatctgctctagtgcaaactctatcgtctccaggccatggtgatt 27292590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 41940832 - 41940788
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||    
T  41940832 ggttgtcttcgagtccgactcaactactctagtgcaaactctatc 41940788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 32632607 - 32632673
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||||||||||||| |||||||||||| ||||| ||||| |||| ||| || |||||  |||||||    
T  32632607 ggttgtctttgagtctgactcatctactttagtgtaagctttatcgtctccgagccatagtgattca 32632673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 44527345 - 44527410
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  44527345 ggttgtcttcgagtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattc 44527410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 2885315 - 2885380
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||| ||| ||||||    
T  2885315 ggttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgattc 2885380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 44602867 - 44602925
Alignment:
Q  284 ctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| ||| |||| ||||    
T  44602867 ctactctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgctatt 44602925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 51113407 - 51113472
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| |||  |||||||| ||||||    
T  51113407 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctctgggccatggtgattc 51113472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 4395224 - 4395294
Alignment:
Q  237 tttgttgatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    |||| |||||| ||||||||| ||  |||| |||| |||||| ||||||||||||||||||||||||||||    
T  4395224 tttgctgatgcgaatagatgggaccaggttatcttcgagtccaactcatctactctagtgcaagctctatc 4395294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 5609431 - 5609497
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||||||| |||| |||||||||||||||||||||| ||||||| |||  ||| |||| |||||||    
T  5609431 ggttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattca 5609497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 36733788 - 36733869
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| ||||| |||||    ||||||||||||||| |||| ||| |||||||||||||||||  ||| |||||||||    
T  36733788 ggttgtcttcgagtctgactctataactctagtgcaagctatatcgtctccgggccatgatgattcataattctatgttatt 36733869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 48949819 - 48949754
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| |||| | ||||| |||||||||||||||| ||||| ||| ||||||||| ||||||    
T  48949819 ggttgtcttcgagttcaactcagctactctagtgcaagcgctatcgtctccgggccatggtgattc 48949754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 16816923 - 16816853
Alignment:
Q  235 attttgttgatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctcta 303  Q
    |||||| ||||||||| |||||| ||  ||||||||| ||||||||||| ||||||||||| |||| ||||    
T  16816923 attttgctgatgcaaacagatgggaccgggttgtcttcgagtccgactcgtctactctagttcaagttcta 16816853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 21031247 - 21031321
Alignment:
Q  267 ctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttat 341  Q
    ||||||||| |||||| ||| |||||||||||||||||| ||| ||| | ||| ||||||   ||||||||||||    
T  21031247 ctttgagtctgactcagctattctagtgcaagctctatcgtctccggactatggtgattcggaattttatgttat 21031321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 52109545 - 52109610
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||||||||  || |||||||||||||| ||||||||||  ||| ||| ||||| ||||||    
T  52109545 ggttgtctttgagtgtgattcatctactctagtacaagctctattgtctccggaccatggtgattc 52109610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 10105680 - 10105724
Alignment:
Q  158 atttgttcttttactctctttatctttgttctttgatttgattgt 202  Q
    |||||||| |||||||||||||||||| ||||||  |||||||||    
T  10105680 atttgttcatttactctctttatctttattctttattttgattgt 10105724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 23854025 - 23854090
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||    
T  23854025 gttgtcttcgagtccgactcatcaactctagtgcaagctctatcgtctccgggccatggtgattca 23854090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 40588825 - 40588760
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||||||||| || ||||||||||||||| || ||||||| ||  ||||||||||||||||    
T  40588825 ggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattc 40588760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 33642859 - 33642793
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||||  ||||| |||||||||||||| |||||||||| || ||| ||||||||| |||||||    
T  33642859 ggttgtcttcaagtccaactcatctactctaatgcaagctctgtcgtctccgggccatggtgattca 33642793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 8451218 - 8451137
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    ||||||||| ||||| |||||||||||| ||||||||||| |||| ||| | || |||| ||||||   |||||||||||||    
T  8451218 ggttgtcttcgagtctgactcatctactttagtgcaagctttatcgtctccaggtcatggtgattcggaattttatgttatt 8451137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 13415116 - 13415180
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||||||||||| || |||||||||||||||| | |||| ||  ||||||||| ||||||    
T  13415116 gttgtctttgagtccgattcttctactctagtgcaaggtatatcgtccccgggccatggtgattc 13415180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 185712 - 185620
Alignment:
Q  237 tttgttgatgcaaatagatggaac--ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||||||||  ||||||||||||  ||||||||  ||||| |||||  ||||| ||||||||||||| || ||| ||| ||||| |||||||    
T  185712 tttgttgatgtgaatagatggaaccgggttgtctacgagtctgactctgctactttagtgcaagctctttcgtctccggaccatggtgattca 185620  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 598332 - 598267
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    |||||||||  |||| |||| | |||||||||||||||||||||| ||||| || |||| ||||||    
T  598332 ggttgtcttcaagtcggacttagctactctagtgcaagctctatcgtcttcaggtcatggtgattc 598267  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 53497124 - 53497189
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||| ||||||    
T  53497124 ggttgtcttcgagtccgactcatctactcttgtgcaagctctatcgtctccgggccatggtgattc 53497189  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 48227507 - 48227550
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48227507 gttgtctttgagtccgactcatctactctagtgcaagctctatc 48227550  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 27608998 - 27608933
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| ||| ||||||||| ||||||    
T  27608998 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattc 27608933  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 34497467 - 34497402
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| ||| ||||||||| ||||||    
T  34497467 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattc 34497402  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 647253 - 647193
Alignment:
Q  266 tctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  647253 tcttcgagtctgactcatctactctagtgcaagctctatcgtctccgggccatggtgattc 647193  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 2615576 - 2615641
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    ||||||||| | ||||||||| |||||||||||| ||||||||| |||| | |||||| |||||||    
T  2615576 gttgtctttcaatccgactcaactactctagtgcgagctctatcgtctttgtgccatggtgattca 2615641  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 42340371 - 42340306
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattca 327  Q
    |||||||| ||||| |||||| ||||| ||||||||||||| || ||| ||||||||| |||||||    
T  42340371 gttgtcttcgagtcagactcagctactttagtgcaagctctgtcgtctccgggccatggtgattca 42340306  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 24176862 - 24176927
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| ||||| ||| || |||||||||||||||||||||| |||  ||| |||| ||||||    
T  24176862 ggttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgattc 24176927  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 55199603 - 55199668
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    |||||||||  ||||||||||| ||||||| |||||||| ||||| ||| |||| |||| ||||||    
T  55199603 ggttgtcttcaagtccgactcagctactctggtgcaagcgctatcgtctacgggtcatggtgattc 55199668  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 14680233 - 14680321
Alignment:
Q  242 tgatgcaaatagatggaacgg--ttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaa 328  Q
    ||||||||| ||||||||| |  |||||||||| |||||||| ||||||||| ||||||||||||||||| |||||  || ||||||||    
T  14680233 tgatgcaaacagatggaaccgagttgtctttgattccgactcgtctactctattgcaagctctatcatctccgggcagtggtgattcaa 14680321  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 15053270 - 15053205
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattc 326  Q
    ||||||||| |||||||||||| |||||||||||||| | ||||| ||||||||||||| ||||||    
T  15053270 ggttgtcttcgagtccgactcagctactctagtgcaaacgctatcgtcttcgggccatggtgattc 15053205  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 28107232 - 28107312
Alignment:
Q  262 gttgtctttgagtccgactcatctactctagtgcaagctctatcatcttcgggccatgatgattcaagattttatgttatt 342  Q
    |||||||| |||||  ||||  |||||||||||||||||||||| ||| ||||||||| |||||||  ||| |||||||||    
T  28107232 gttgtcttcgagtctaactccgctactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgttatt 28107312  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 15606089 - 15606045
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||    
T  15606089 ggttgtcttcaagtccgactcagctactctagtgcaagctctatc 15606045  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 29368141 - 29368098
Alignment:
Q  271 gagtccgactcatctactctagtgcaagctctatcatcttcggg 314  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||    
T  29368141 gagtccgactcatctactatagtgcaagctctatcgtctccggg 29368098  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 30802086 - 30802042
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatc 305  Q
    ||||||||| |||||||| ||| ||||| ||||||||||||||||    
T  30802086 ggttgtcttcgagtccgattcagctactttagtgcaagctctatc 30802042  T

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Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 349 - 311
Alignment:
Q  271 gagtccgactcatctactctagtgcaagctctatcatct 309  Q
    |||||||||||||||||||||||||||||||||||||||    
T  349 gagtccgactcatctactctagtgcaagctctatcatct 311  T

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Target: scaffold0446 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 278 - 326
Alignment:
Q  261 ggttgtctttgagtccgactcatctactctagtgcaagctctatcatct 309  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  278 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatct 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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