View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_high_35 (Length: 300)

Name: NF19563_high_35
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_high_35
NF19563_high_35
[»] chr8 (13 HSPs)
chr8 (1-223)||(28404020-28404243)
chr8 (222-282)||(36804059-36804119)
chr8 (223-280)||(1660056-1660113)
chr8 (224-280)||(417611-417667)
chr8 (224-280)||(12876930-12876986)
chr8 (224-280)||(14029586-14029642)
chr8 (224-280)||(23712563-23712619)
chr8 (224-280)||(24517025-24517081)
chr8 (222-280)||(6338051-6338109)
chr8 (240-280)||(1656144-1656184)
chr8 (240-280)||(12880725-12880765)
chr8 (240-280)||(14033580-14033620)
chr8 (240-280)||(37404678-37404718)
[»] chr3 (4 HSPs)
chr3 (222-286)||(3808959-3809023)
chr3 (224-280)||(44174548-44174604)
chr3 (224-280)||(44181248-44181304)
chr3 (240-280)||(3805211-3805251)
[»] chr4 (4 HSPs)
chr4 (221-280)||(45698225-45698284)
chr4 (222-280)||(23318081-23318139)
chr4 (226-280)||(51754755-51754809)
chr4 (240-280)||(51754442-51754482)
[»] chr7 (5 HSPs)
chr7 (222-280)||(39751403-39751461)
chr7 (221-286)||(24050520-24050585)
chr7 (229-280)||(5094128-5094179)
chr7 (224-286)||(31297591-31297653)
chr7 (240-280)||(5098393-5098433)
[»] chr6 (2 HSPs)
chr6 (222-280)||(13848958-13849016)
chr6 (240-280)||(13845010-13845050)
[»] chr5 (5 HSPs)
chr5 (222-280)||(31170111-31170169)
chr5 (225-280)||(27261386-27261441)
chr5 (222-268)||(28392292-28392338)
chr5 (224-266)||(41873282-41873324)
chr5 (240-280)||(31174083-31174123)
[»] scaffold0035 (2 HSPs)
scaffold0035 (225-280)||(84190-84245)
scaffold0035 (240-280)||(80059-80099)
[»] chr2 (4 HSPs)
chr2 (223-280)||(2387327-2387384)
chr2 (224-275)||(8264532-8264583)
chr2 (221-280)||(36216293-36216352)
chr2 (224-286)||(40321958-40322020)
[»] chr1 (2 HSPs)
chr1 (226-280)||(8026502-8026556)
chr1 (240-280)||(25644538-25644578)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28404243 - 28404020
Alignment:
Q  1 agaaggtgaagagggttgtggagagatggagattgttgtggcgaccggttacgatgatgtgagcgtggatttgatgagcttgttgcatggttttgcatga 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  28404243 agaaggtgaagagggttgtagagagatggagattgttgtggcgaccggttacgatgatgtgagcgtagatttgatgagcttgttgcatggttttgcaaga 28404144  T
Q  101 tgataacagtgattttatgcattcgttgcttagaaatcgtggtgataatgcatgttttgttgccattgtagcataaccagttgaaacgtagtatcctac- 199  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||  ||||||| | ||||||||||     
T  28404143 tgataacagtgattttatgcgttcgttgcttagaaatcgtggtaatattacatgttttgttgccattgttgcataacttgttgaaatggagtatcctaca 28404044  T
Q  200 aaggtttaataaagaatcaataaa 223  Q
    ||||||||||||||||||||||||    
T  28404043 aaggtttaataaagaatcaataaa 28404020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 36804119 - 36804059
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaaaa 282  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||    
T  36804119 aaggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaaaa 36804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 1660113 - 1660056
Alignment:
Q  223 aggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  1660113 aggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 1660056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 417667 - 417611
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| || ||||||||    
T  417667 ggttttttctaaattacctttgaaaattcatgggcaatttacccaaactaatcaaaa 417611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 12876930 - 12876986
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  12876930 ggttttttctaaattacctttgaaaactcatgggcaatttacccacaccaatcaaaa 12876986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 14029586 - 14029642
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||| |||||||||||||||||| ||||||||||| || |||||||||||    
T  14029586 ggttttttctaaattacctttgaaaattcatgggcaatttacgcaaaccaatcaaaa 14029642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 23712563 - 23712619
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||| |||||||||||||||| | |||||||||||||| |||||||||||    
T  23712563 ggttttttctaaattacctttgaaaatttatgggcaatttacccaaaccaatcaaaa 23712619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 24517081 - 24517025
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  24517081 ggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 24517025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 6338109 - 6338051
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||||| ||||||||| |||| ||| || ||||||||||| |||||||||||    
T  6338109 aaggttttttctaaattacctttaaaaactcatggacaatttacccaaaccaatcaaaa 6338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 1656144 - 1656184
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  1656144 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 1656184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 12880765 - 12880725
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  12880765 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 12880725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 14033620 - 14033580
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  14033620 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 14033580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 37404718 - 37404678
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  37404718 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 37404678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 3809023 - 3808959
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaaaatttc 286  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||| || |||||||||||||||||    
T  3809023 aaggttttttctaaattacctttgaaaactcatgggcaatttactcaaaccaatcaaaaaatttc 3808959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 44174548 - 44174604
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  44174548 ggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 44174604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 44181248 - 44181304
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  44181248 ggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 44181304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 3805211 - 3805251
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  3805211 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 3805251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 45698225 - 45698284
Alignment:
Q  221 aaaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||||    
T  45698225 aaaggttttttctaaattacctttgaaaattcatgggcaatttacccaaatcaatcaaaa 45698284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 23318139 - 23318081
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||||| |||||||||||||| |||  ||||||||||||| | |||||||||    
T  23318139 aaggttttttctaaattacctttgaaaactcataggcaatttacccaaatcaatcaaaa 23318081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 51754809 - 51754755
Alignment:
Q  226 ttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||| |||||||||||||||||| |||||||||| ||| | |||||||||    
T  51754809 ttttttctaaattacctttgaaaattcatgggcaatttatccaaatcaatcaaaa 51754755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 51754442 - 51754482
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  51754442 cctttaaaaattcatgggcaatttacccaaaccaatcaaaa 51754482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 39751403 - 39751461
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  39751403 aaggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 39751461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 24050520 - 24050585
Alignment:
Q  221 aaaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaaaatttc 286  Q
    |||||||||||||| |||||||||||||||||| || |||||||| || | |||||||||||||||    
T  24050520 aaaggttttttctaaattacctttgaaaattcatggacaatttactcaaatcaatcaaaaaatttc 24050585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 5094128 - 5094179
Alignment:
Q  229 tttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||| |||||||||||||||||| |||||||||||||| | |||||||||    
T  5094128 tttctaaattacctttgaaaattcatgggcaatttacccaaatcaatcaaaa 5094179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 31297591 - 31297653
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaaaatttc 286  Q
    |||||||| || |||||||||||||| ||| ||| |||||| ||| |||||||||||||||||    
T  31297591 ggttttttttaaattacctttgaaaactcatgggtaatttatccaaaccaatcaaaaaatttc 31297653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 5098433 - 5098393
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  5098433 cctttgaaaattcatgggcaatttacccaaaccaatcaaaa 5098393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 13849016 - 13848958
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  13849016 aaggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 13848958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 13845010 - 13845050
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  13845010 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 13845050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 31170111 - 31170169
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  31170111 aaggttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 31170169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 27261386 - 27261441
Alignment:
Q  225 gttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| |||||||||||||| ||| |||||||||||||| | |||||||||    
T  27261386 gttttttctaaattacctttgaaaactcatgggcaatttacccaaatcaatcaaaa 27261441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 28392292 - 28392338
Alignment:
Q  222 aaggttttttctacattacctttgaaaattcacgggcaatttaccca 268  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  28392292 aaggttttttctaaattacctttgaaaactcatgggcaatttaccca 28392338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 41873282 - 41873324
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacc 266  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||    
T  41873282 ggttttttctaaattacctttgaaaactcatgggcaatttacc 41873324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 31174123 - 31174083
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  31174123 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 31174083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 84245 - 84190
Alignment:
Q  225 gttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||    
T  84245 gttttttctaaattacctttgaaaactcatgggcaatttacccaaaccaatcaaaa 84190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 80059 - 80099
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  80059 cctttgaaaactcatgggcaatttacccaaaccaatcaaaa 80099  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 2387384 - 2387327
Alignment:
Q  223 aggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||||| |||||||||||||| ||| |||||||||| ||| |||||||||||    
T  2387384 aggttttttctaaattacctttgaaaactcatgggcaatttatccaaaccaatcaaaa 2387327  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 8264532 - 8264583
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaat 275  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||| ||||||    
T  8264532 ggttttttctaaattacctttgaaaattcatgggtaatttacccaaaccaat 8264583  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 36216352 - 36216293
Alignment:
Q  221 aaaggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||||||||| |||||||||||||| ||| ||| |||||||||| | |||||||||    
T  36216352 aaaggttttttctaaattacctttgaaaactcatgggtaatttacccaaatcaatcaaaa 36216293  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 40321958 - 40322020
Alignment:
Q  224 ggttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaaaatttc 286  Q
    ||||||||||| |||||||||||||||||| || ||||||| | | |||||||||||| ||||    
T  40321958 ggttttttctaaattacctttgaaaattcatggtcaatttatctaaaccaatcaaaaattttc 40322020  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 8026502 - 8026556
Alignment:
Q  226 ttttttctacattacctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    ||||||||| |||||||||||||| ||| |||||||||| ||| |||||||||||    
T  8026502 ttttttctaaattacctttgaaaactcatgggcaatttatccacaccaatcaaaa 8026556  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 25644538 - 25644578
Alignment:
Q  240 cctttgaaaattcacgggcaatttacccagaccaatcaaaa 280  Q
    |||||||| ||||| |||||||||||||| |||||||||||    
T  25644538 cctttgaagattcatgggcaatttacccaaaccaatcaaaa 25644578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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