View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19563_high_39 (Length: 276)
Name: NF19563_high_39
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_high_39 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 24518348 - 24518087
Alignment:
| Q |
15 |
aatataagacttaaaatagtcccacacaatcccctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24518348 |
aatataagacttaaattagtcccacacaatcctctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
24518249 |
T |
|
| Q |
115 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccacgtccacaagtgattctctaagct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24518248 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccatgtccacaagtgattctctaagct |
24518149 |
T |
|
| Q |
215 |
gattcctttctagcacatgcttcaaaccctacacaattcacattcaactcatacaaccaatt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
24518148 |
gattcctttctagcacatgcttcaaaccctacataatttacattcaactcatacaaccaatt |
24518087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 24507314 - 24507177
Alignment:
| Q |
54 |
agaaccaagattcttccacaaatcaattggaagaaaaaa-tggaaactcccatatagagaaaatttcacctactaaaatcaaggaatgagagaaaacaat |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
24507314 |
agaaccaagattcttccacaaatcaattggaaaaaaaaaatggaaactcccatatagagaaaatttcatcaactaaaatcaaggaatgagagaaaac-at |
24507216 |
T |
|
| Q |
153 |
aacattttgagcccgcaaaatggtactaaaaactaccac |
191 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
24507215 |
aacattttgagcacgcaaaatagtattaaaaactaccac |
24507177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 24507460 - 24507421
Alignment:
| Q |
18 |
ataagacttaaaatagtcccacacaatcccctcacaagaa |
57 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
24507460 |
ataagagttaaaatagtcctacacaatcccctcacaagaa |
24507421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 24506500 - 24506448
Alignment:
| Q |
218 |
tcctttctagcacatgcttcaaaccctacacaattcacattcaactcatacaa |
270 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||||||| |||||||||||| |||| |
|
|
| T |
24506500 |
tccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaa |
24506448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University