View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19563_high_41 (Length: 264)
Name: NF19563_high_41
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_high_41 |
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| [»] scaffold0640 (3 HSPs) |
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| [»] scaffold0271 (3 HSPs) |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (2 HSPs) |
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Alignment Details
Target: scaffold0640 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 8401 - 8653
Alignment:
| Q |
1 |
acagcaacgtaatcataaacttggtgactagcgtcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcataaacttaacctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8401 |
acagcaacgtaatcataaacttggcgactagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcataaacttcacctcaa |
8500 |
T |
|
| Q |
101 |
agttgcaatttgagactaaaatacacctaatgctgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacagcattgataacttgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
8501 |
agttgcaatttgagactaaaatacacctaatgttgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacaacattaataacttgtga |
8600 |
T |
|
| Q |
201 |
atcacttaggaacatcacacttgacagtcccatctcatgcacctataattcat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8601 |
atcacttaggaacatcacacttgacagtcccatctcatgcacctataattcat |
8653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 1873 - 2003
Alignment:
| Q |
119 |
aaatacacctaatgctgtaaacaatcacattaaactccgatgcaca-tccaggtctggcgtgaacagcattgataa---cttgtgaatcacttaggaaca |
214 |
Q |
| |
|
||||||||| |||| ||| ||||| | |||| ||||||||| || | ||||| || | ||||||| ||||||||| |||| ||||||||||||||| |
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| T |
1873 |
aaatacaccaaatgatgttaacaaactcattgaactccgatacaaactccagccctagtgtgaacaacattgataagaacttgcgaatcacttaggaacg |
1972 |
T |
|
| Q |
215 |
tcacacttgacagtcccatctcatgcaccta |
245 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |
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|
| T |
1973 |
tcttacttgacagtcccatctcctgcaccta |
2003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 1776 - 1857
Alignment:
| Q |
6 |
aacgtaatcataaacttggtgactagcgtcataaatggccgctc-------tagctagagtatgagctaccatatccgcttg |
80 |
Q |
| |
|
|||||||||||||| |||| ||||||| | | |||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
1776 |
aacgtaatcataaatttggcgactagcataagaaatggccgctctagctagtagctagagtatgagctaccatattcgcttg |
1857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 33324627 - 33324375
Alignment:
| Q |
1 |
acagcaacgtaatcataaacttggtgactagcgtcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcataaacttaacctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
33324627 |
acagcaacgtaatcataaacttggcgactagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcataaacttcacctcaa |
33324528 |
T |
|
| Q |
101 |
agttgcaatttgagactaaaatacacctaatgctgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacagcattgataacttgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
33324527 |
agttgcaatttgagactaaaatacacctaatgttgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacaacattaataacttgtga |
33324428 |
T |
|
| Q |
201 |
atcacttaggaacatcacacttgacagtcccatctcatgcacctataattcat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33324427 |
atcacttaggaacatcacacttgacagtcccatctcatgcacctataattcat |
33324375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 1043036 - 1042784
Alignment:
| Q |
1 |
acagcaacgtaatcataaacttggtgactagcgtcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcataaacttaacctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
1043036 |
acagcaacgtaatcataaacttggcgactagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcataaacttcacctcaa |
1042937 |
T |
|
| Q |
101 |
agttgcaatttgagactaaaatacacctaatgctgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacagcattgataacttgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
1042936 |
agttgcaatttgagactaaaatacacctaatgttgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacaacattaataacttgtga |
1042837 |
T |
|
| Q |
201 |
atcacttaggaacatcacacttgacagtcccatctcatgcacctataattcat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042836 |
atcacttaggaacatcacacttgacagtcccatctcatgcacctataattcat |
1042784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 41194100 - 41193863
Alignment:
| Q |
10 |
taatcataaacttggtgactagcgtcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcataa---acttaacctcaaa-gttg |
105 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| |
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|
| T |
41194100 |
taatcataaacttggcgactagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcagaattaacttaacctcaaaagttg |
41194001 |
T |
|
| Q |
106 |
caatttgagactaaaatacacctaatgctgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacagcattgataacttgtgaatcac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41194000 |
caatttgagactaaaatacacctaatgctgtaaacaatcacattaaactccgatgcacctccaggtctggcgtgaacagcattgataacttgcgaatcac |
41193901 |
T |
|
| Q |
206 |
ttaggaacatcacacttgacagtcccatctcatgcacc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193900 |
ttaggaacatcacacttgacagtcccatctcatgcacc |
41193863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 41409094 - 41408965
Alignment:
| Q |
119 |
aaatacacctaatgctgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacagcattgataa---cttgtgaatcacttaggaacat |
215 |
Q |
| |
|
||||||||| |||| ||| ||||| | |||| ||||||||| || |||| || | ||||||| ||||||||| |||| ||||||||||||||| | |
|
|
| T |
41409094 |
aaatacaccaaatgatgttaacaaactcattgaactccgatacaacgccagccctagtgtgaacatcattgataagaacttgcgaatcacttaggaacgt |
41408995 |
T |
|
| Q |
216 |
cacacttgacagtcccatctcatgcaccta |
245 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |
|
|
| T |
41408994 |
ctcacttgacagtcccatctcctgcaccta |
41408965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 41409191 - 41409141
Alignment:
| Q |
6 |
aacgtaatcataaacttggtgactagcgtcataaatggccgctctagctag |
56 |
Q |
| |
|
|||||||||||||| |||| ||||||| | | ||||||||||||||||||| |
|
|
| T |
41409191 |
aacgtaatcataaatttggcgactagcataagaaatggccgctctagctag |
41409141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 22361 - 22490
Alignment:
| Q |
119 |
aaatacacctaatgctgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacagcattgataa---cttgtgaatcacttaggaacat |
215 |
Q |
| |
|
||||||||| |||| ||| ||||| | |||| ||||||||| || |||| || | ||||||| ||||||||| |||| ||||||||||||||| | |
|
|
| T |
22361 |
aaatacaccaaatgatgttaacaaactcattgaactccgatacaacgccagccctagtgtgaacatcattgataagaacttgcgaatcacttaggaacgt |
22460 |
T |
|
| Q |
216 |
cacacttgacagtcccatctcatgcaccta |
245 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |
|
|
| T |
22461 |
ctcacttgacagtcccatctcctgcaccta |
22490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 22264 - 22345
Alignment:
| Q |
6 |
aacgtaatcataaacttggtgactagcgtcataaatggccgctc-------tagctagagtatgagctaccatatccgcttg |
80 |
Q |
| |
|
|||||||||||||| |||| ||||||| | | |||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
22264 |
aacgtaatcataaatttggcgactagcataagaaatggccgctctagctagtagctagagtatgagctaccatattcgcttg |
22345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 12699 - 12749
Alignment:
| Q |
3 |
agcaacgtaatcataaacttggtgactagcgtcataaatggccgctctagc |
53 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
12699 |
agcaatgtaatcataaacttggcgactagcatgataaatgaccgctctagc |
12749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 4969 - 4919
Alignment:
| Q |
3 |
agcaacgtaatcataaacttggtgactagcgtcataaatggccgctctagc |
53 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
4969 |
agcaatgtaatcataaacttggcgactagcatgataaatggccgctctagc |
4919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 1373 - 1323
Alignment:
| Q |
3 |
agcaacgtaatcataaacttggtgactagcgtcataaatggccgctctagc |
53 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
1373 |
agcaatgtaatcataaacttggcgactagcatgataaatggccgctctagc |
1323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 22782 - 22832
Alignment:
| Q |
3 |
agcaacgtaatcataaacttggtgactagcgtcataaatggccgctctagc |
53 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
22782 |
agcaatgtaatcataaacttggcgactagcatgataaatggccgctctagc |
22832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 43503199 - 43503161
Alignment:
| Q |
85 |
ataaacttaacctcaaagttgcaatttgagactaaaata |
123 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
43503199 |
ataaacttaacctcaaagttacaattcgagactaaaata |
43503161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 3428005 - 3428049
Alignment:
| Q |
87 |
aaacttaacctcaaagttgcaatttgagactaaaatacacctaat |
131 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
3428005 |
aaacttaacctcaaagttacaattcgaaactaaaatacatctaat |
3428049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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