View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_high_43 (Length: 261)

Name: NF19563_high_43
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_high_43
NF19563_high_43
[»] chr8 (9 HSPs)
chr8 (1-192)||(45531391-45531586)
chr8 (1-181)||(23136651-23136838)
chr8 (1-99)||(23160813-23160913)
chr8 (19-107)||(45250800-45250890)
chr8 (65-107)||(17890736-17890778)
chr8 (65-107)||(19742782-19742824)
chr8 (1-107)||(8351403-8351511)
chr8 (2-107)||(35136919-35137026)
chr8 (214-242)||(45547376-45547404)
[»] scaffold0059 (2 HSPs)
scaffold0059 (4-181)||(66941-67117)
scaffold0059 (4-181)||(75046-75222)
[»] chr3 (6 HSPs)
chr3 (4-181)||(20919454-20919630)
chr3 (4-181)||(20928416-20928592)
chr3 (1-103)||(37198063-37198165)
chr3 (122-181)||(37198007-37198069)
chr3 (1-107)||(2765798-2765906)
chr3 (1-107)||(50246378-50246486)
[»] chr6 (3 HSPs)
chr6 (1-181)||(1607721-1607903)
chr6 (1-161)||(11550470-11550632)
chr6 (9-155)||(4856661-4856809)
[»] chr2 (5 HSPs)
chr2 (1-181)||(41747554-41747739)
chr2 (65-107)||(16139518-16139560)
chr2 (22-107)||(24971948-24972035)
chr2 (120-177)||(16311472-16311529)
chr2 (1-107)||(20103739-20103847)
[»] chr5 (2 HSPs)
chr5 (2-161)||(9662786-9662947)
chr5 (20-107)||(27588856-27588945)
[»] chr4 (2 HSPs)
chr4 (119-181)||(35648158-35648220)
chr4 (1-107)||(14252984-14253092)
[»] scaffold0216 (1 HSPs)
scaffold0216 (5-107)||(18275-18379)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-107)||(26886-26993)
[»] chr1 (1 HSPs)
chr1 (1-107)||(45915205-45915312)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45531391 - 45531586
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45531391 atgctcttcaatgggatcatgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaatcaactccataatctacaaccaagtgattaaac 45531490  T
Q  101 ttctatg----nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggaggataaagagatgg 192  Q
    |||||||             |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||| ||||||||||    
T  45531491 ttctatgtttttttttttttacaaaaaacttccatgcttttaaaacacataaaatactttctcttatgaatttgtttatggaggagaaagagatgg 45531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 23136838 - 23136651
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaac 100  Q
    |||||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  23136838 atgctcttcaatgggatcctgagaaagtagaattaacaattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaaccaagtgattaaac 23136739  T
Q  101 ttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatac-----tttcttttatgaatttgtttatggagga 181  Q
    |||||||           |||||||||||||||||||||||||||||| | ||||     ||| ||||||||||||||||||||||||    
T  23136738 ttctatgttgttttgtttacaaaaaacttccatgcttttaaaacacagaatatactttttttttttttatgaatttgtttatggagga 23136651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23160813 - 23160913
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||||| | | |||||||||| ||||| | || ||| || |||||||||  |||||| |||||| | ||||||||||||||||| |||||||    
T  23160813 atgctctccaatggaaccttgagaaagtagaattagcaataaacaattagatacacataaaaaataaaatcagccccataatctacaaccaattgattaa 23160912  T
Q  99 a 99  Q
    |    
T  23160913 a 23160913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 45250800 - 45250890
Alignment:
Q  19 atgagaaagtaaaattaacgattaactataagatacac--aaaaaatgaaatcaactccataatctacaaccaagtgattaaacttctatg 107  Q
    |||||||||||  || ||| |||||| || |||||||   ||||||  |||||||| | ||||||||||||||| ||||||||||||||||    
T  45250800 atgagaaagtagcatcaacaattaacaattagatacaactaaaaaagaaaatcaaccctataatctacaaccaaatgattaaacttctatg 45250890  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 17890736 - 17890778
Alignment:
Q  65 aaatcaactccataatctacaaccaagtgattaaacttctatg 107  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||    
T  17890736 aaatcaaccccataatctacaaccaagtgattaatcttatatg 17890778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 19742824 - 19742782
Alignment:
Q  65 aaatcaactccataatctacaaccaagtgattaaacttctatg 107  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||    
T  19742824 aaatcaaccccataatctacaaccaagtgattaatcttatatg 19742782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 8351511 - 8351403
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |  |||||  ||||||||  ||||||||||||||||||||||||    
T  8351511 atgctctccaatggaaccttgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaacctcataatctacaaccaagtgattaa 8351412  T
Q  99 acttctatg 107  Q
     ||| ||||    
T  8351411 tcttatatg 8351403  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 35137026 - 35136919
Alignment:
Q  2 tgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaaa 99  Q
    |||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |  |||||  |||||||| |||| ||||||||||||||||||||     
T  35137026 tgctctccaatggaaccctgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaaccccatgatctacaaccaagtgattaat 35136927  T
Q  100 cttctatg 107  Q
    ||| ||||    
T  35136926 cttatatg 35136919  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 45547376 - 45547404
Alignment:
Q  214 agtacggtctggattggcttcctcctttt 242  Q
    |||||||||||||||||||||||||||||    
T  45547376 agtacggtctggattggcttcctcctttt 45547404  T

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Target: scaffold0059 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 66941 - 67117
Alignment:
Q  4 ctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaacttc 103  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  66941 ctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctacaaccaagtgattaaacttc 67040  T
Q  104 tatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 181  Q
     |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  67041 catg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 67117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 75046 - 75222
Alignment:
Q  4 ctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaacttc 103  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  75046 ctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctacaaccaagtgattaaacttc 75145  T
Q  104 tatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 181  Q
     |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  75146 catg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 75222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 20919630 - 20919454
Alignment:
Q  4 ctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaacttc 103  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  20919630 ctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctacaaccaagtgattaaacttc 20919531  T
Q  104 tatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 181  Q
     |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20919530 catg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 20919454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 20928592 - 20928416
Alignment:
Q  4 ctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaacttc 103  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  20928592 ctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctacaaccaagtgattaaacttc 20928493  T
Q  104 tatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 181  Q
     |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20928492 catg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 20928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 37198165 - 37198063
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaac 100  Q
    ||||||||||||||| || |||||||||| ||||||| |||||| |||||||||||||||||| |||| |||  |||||| |||||||||||||||||||    
T  37198165 atgctcttcaatgggttcctgagaaagtagaattaacaattaacaataagatacacaaaaaataaaataaacctcataatatacaaccaagtgattaaac 37198066  T
Q  101 ttc 103  Q
    |||    
T  37198065 ttc 37198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 37198069 - 37198007
Alignment:
Q  122 aaacttccatgcttttaaaacacaggaaatac---tttcttttatgaatttgtttatggagga 181  Q
    ||||||||||||||||||||||||| ||||||   ||| ||||||||||||||||||||||||    
T  37198069 aaacttccatgcttttaaaacacagaaaatactttttttttttatgaatttgtttatggagga 37198007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 2765798 - 2765906
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||||||| | |||||||||| ||| ||| |||||| || ||||||| |  |||||  |||||||| | ||||| ||||||||| |||||||    
T  2765798 atgctctccaatgggaccctgagaaagtagaatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatttacaaccaaatgattaa 2765897  T
Q  99 acttctatg 107  Q
    |||||||||    
T  2765898 acttctatg 2765906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 50246378 - 50246486
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||| ||||| ||||||||||  || ||| |||||| || ||||||| |  |||||  |||||||| | ||||| |||||| || |||||||    
T  50246378 atgctctccaataggatcctgagaaagtagcatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatttacaactaaatgattaa 50246477  T
Q  99 acttctatg 107  Q
    |||||||||    
T  50246478 acttctatg 50246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 1607721 - 1607903
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaac 100  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  1607721 atgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccataatctacaaccaagtgattaaac 1607820  T
Q  101 ttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 181  Q
    |||||||           |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  1607821 ttctatgtttttttgtttacaaaaaacttccatgcttttaaaacacagaaaatacttttttttatgaatttgtttatggagga 1607903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 11550632 - 11550470
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaac 100  Q
    |||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||    
T  11550632 atgctcctcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaaccaaatgattaaac 11550533  T
Q  101 ttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttctttt 161  Q
    |||||||           |||||||||||||||||||||||||||||| | ||||||| ||||    
T  11550532 ttctatgttttttttttaacaaaaaacttccatgcttttaaaacacagaatatactttttttt 11550470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 4856661 - 4856809
Alignment:
Q  9 caatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaacttctatg- 107  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||||     
T  4856661 caatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaaccaaatgattaaacttttatgt 4856760  T
Q  108 -nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactt 155  Q
              |||||||||||||||||||||||||||||| | ||||||    
T  4856761 ttttttgtttacaaaaaacttccatgcttttaaaacacagaatatactt 4856809  T

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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 41747739 - 41747554
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaac 100  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  41747739 atgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaaccaagtgattaaac 41747640  T
Q  101 ttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatac---tttcttttatgaatttgtttatggagga 181  Q
    |||||||           |||||||||||||||||||||||||||||| | ||||   ||| ||||||||||||||||||||||||    
T  41747639 ttctatgtttttttgtttacaaaaaacttccatgcttttaaaacacagaatatactttttttttttatgaatttgtttatggagga 41747554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 16139560 - 16139518
Alignment:
Q  65 aaatcaactccataatctacaaccaagtgattaaacttctatg 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  16139560 aaatcaactccataatctacaaccaagtgattaaacttatatg 16139518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 24971948 - 24972035
Alignment:
Q  22 agaaagtaaaattaacgattaactataagatacac--aaaaaatgaaatcaactccataatctacaaccaagtgattaaacttctatg 107  Q
    ||||||||  || |||||||||| || |||||||   ||||||  |||||||| | ||||||||||||||| ||||||||||||||||    
T  24971948 agaaagtagcatcaacgattaacaattagatacaactaaaaaagaaaatcaaccctataatctacaaccaaatgattaaacttctatg 24972035  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 16311472 - 16311529
Alignment:
Q  120 aaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatgg 177  Q
    |||| |||||||||||||||||||||  |||||| || ||||||||| || |||||||    
T  16311472 aaaatcttccatgcttttaaaacacataaaatacctttttttatgaaattttttatgg 16311529  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 20103847 - 20103739
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |  |||||  ||||||||  ||||||||||||||||||||||||    
T  20103847 atgctctccaatggaaccctgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaaccacataatctacaaccaagtgattaa 20103748  T
Q  99 acttctatg 107  Q
     ||| ||||    
T  20103747 tcttatatg 20103739  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 9662786 - 9662947
Alignment:
Q  2 tgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaaccaagtgattaaact 101  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||||||||| ||||||| ||||||||  |||||||||||||||||||||| ||||    
T  9662786 tgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacataaaaaataaaatcaaccacataatctacaaccaagtgatttaact 9662885  T
Q  102 tctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttctttt 161  Q
    ||||||           ||||||||| ||||||||||||||||| || ||||||||||||||    
T  9662886 tctatgtttttttgtttacaaaaaacatccatgcttttaaaacatagaaaatactttctttt 9662947  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 27588945 - 27588856
Alignment:
Q  20 tgagaaagtaaaattaacgattaactataagatacac--aaaaaatgaaatcaactccataatctacaaccaagtgattaaacttctatg 107  Q
    ||||||||||  || |||||||||| || |||||||   ||||||  |||||||| | ||||||||||| ||| ||||||||||||||||    
T  27588945 tgagaaagtagcatcaacgattaacaattagatacaactaaaaaagaaaatcaaccctataatctacaatcaaatgattaaacttctatg 27588856  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 35648220 - 35648158
Alignment:
Q  119 aaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 181  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  35648220 aaaaaacttccatgcttttaaaacacagaaaattctttcttttatgaatttgtttatggagga 35648158  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 14252984 - 14253092
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |  |||||  |||||||| |||||||||||||||||||||||||    
T  14252984 atgctctccaatggaaccctgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaaccccataatctacaaccaagtgattaa 14253083  T
Q  99 acttctatg 107  Q
     ||| ||||    
T  14253084 tcttatatg 14253092  T

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Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 18379 - 18275
Alignment:
Q  5 tcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaaactt 102  Q
    |||||||||||| | ||||||||||  || ||| ||| || || ||||||| |  |||||  |||||||| | ||||||||||||||| |||||||||||    
T  18379 tcttcaatgggaccctgagaaagtagcatcaaccattgacaattagatacaaataaaaaagaaaatcaaccctataatctacaaccaaatgattaaactt 18280  T
Q  103 ctatg 107  Q
    |||||    
T  18279 ctatg 18275  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 26993 - 26886
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||||||| | |||||||||| | | ||| |||||| || ||||||| |  |||||  |||||||| | ||||||||||||||| |||||||    
T  26993 atgctctccaatgggaccctgagaaagtaca-tcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatctacaaccaaatgattaa 26895  T
Q  99 acttctatg 107  Q
    | |||||||    
T  26894 atttctatg 26886  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 45915312 - 45915205
Alignment:
Q  1 atgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaaccaagtgattaa 98  Q
    ||||||| |||||||| | |||||||||| | | ||| |||||| || ||||||| |  |||||  |||||||||  ||||||||||||||| |||||||    
T  45915312 atgctctccaatgggaccctgagaaagtaca-tcaacaattaacaattagatacaaataaaaaagaaaatcaactgtataatctacaaccaaatgattaa 45915214  T
Q  99 acttctatg 107  Q
    |||| ||||    
T  45915213 acttttatg 45915205  T

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