View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_high_45 (Length: 254)

Name: NF19563_high_45
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_high_45
NF19563_high_45
[»] chr2 (3 HSPs)
chr2 (1-236)||(8715326-8715561)
chr2 (12-231)||(8671537-8671760)
chr2 (63-236)||(8714400-8714574)
[»] chr8 (1 HSPs)
chr8 (7-236)||(23445275-23445504)
[»] chr3 (10 HSPs)
chr3 (12-208)||(13753224-13753421)
chr3 (12-208)||(13766627-13766824)
chr3 (53-237)||(14331977-14332162)
chr3 (18-237)||(14325194-14325412)
chr3 (56-237)||(14330984-14331165)
chr3 (56-237)||(14334944-14335125)
chr3 (54-164)||(13739676-13739787)
chr3 (160-236)||(11615964-11616040)
chr3 (166-236)||(11605220-11605290)
chr3 (53-112)||(11605145-11605205)
[»] chr6 (1 HSPs)
chr6 (60-209)||(35078766-35078918)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 8715561 - 8715326
Alignment:
Q  1 aagttttagaatggatcgatatacagtctcaagaataatgactaaaaaattattgtgcattgaatttattcaagaaagtgctttttcctgattaagtata 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8715561 aagttctagaatggatcgatatacagtctcaagaataatgactaaaaaattattgtgaattgaatttattcaagaaagtgctttttcctgattaagtata 8715462  T
Q  101 ttcataaggtttgatgtttaacattattatgatttattgtttaatatttctttgatccatttttgaatgtatcaagtgctagatttttaggaaaatcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8715461 ttcataaggtttgatgtttaacattattatgatttattgtttaatatttctttgatccatttttgaatgtatcaagtgctagatttctaggaaaatcaaa 8715362  T
Q  201 tgcatcgtgttaaattttgtcttgcaaccaagaatc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  8715361 tgcatcgtgttaaattttgtcttgcaaccaagaatc 8715326  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 8671537 - 8671760
Alignment:
Q  12 tggatcgatatacagtctcaagaataatgactaaaaaatta----ttgtgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataa 107  Q
    |||||||||||||| |||||||||||||| | ||||||  |    |||||| |||||||||||||||||||||  |||  ||| ||||||||||||||||    
T  8671537 tggatcgatatacaatctcaagaataatgtcaaaaaaaaaaaatcttgtgc-ttgaatttattcaagaaagtgaatttgactgcttaagtatattcataa 8671635  T
Q  108 ggtttgatgtttaacattattatgatttattg-tttaatatttctttgatccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatc 206  Q
    |||||||||||||||| ||||||| ||||||| |||| ||||||||  |||| ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  8671636 ggtttgatgtttaacagtattatggtttattgttttattatttcttcaatccctttttgaatgtatcaggtgctagatttctaggaaaatcaaatgcatc 8671735  T
Q  207 gtgttaaattttgtcttgcaaccaa 231  Q
    ||| ||||| ||| |||||| ||||    
T  8671736 gtgctaaatattggcttgcacccaa 8671760  T

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Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 8714400 - 8714574
Alignment:
Q  63 aatttattcaagaaagtgctttttcctgattaagtatattcataaggtttgatgtttaacattattatgatttattgtttaat-atttctttgatccatt 161  Q
    ||||||||||||||| ||  ||| |||| |||||||||||||| ||||||||||||||||| || |||| |||||||||| || ||||||||||||| ||    
T  8714400 aatttattcaagaaaatgaatttgcctgcttaagtatattcatcaggtttgatgtttaacactaatatgctttattgttttattatttctttgatccctt 8714499  T
Q  162 tttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtgttaaattttgtcttgcaaccaagaatc 236  Q
    |||||||||  || ||||||||||| |||||||||||||| ||||||| ||||||||| |||||| |||||||||    
T  8714500 tttgaatgtgccaggtgctagatttctaggaaaatcaaatacatcgtgctaaattttggcttgcacccaagaatc 8714574  T

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Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 23445275 - 23445504
Alignment:
Q  7 tagaatggatcgatatacagtctcaagaataatgactaaaaaattattgtgcattgaatttattcaagaaagtgctttttcctgattaagtatattcata 106  Q
    |||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  23445275 tagagtggatcgatatacagtttaaagaataatgactacaaaattattgtgcattgaatttattcaagaaagtgatttttcctgattaattatattcata 23445374  T
Q  107 aggtttgatgtttaacattattatgatttattgtttaatatttctttgatccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||| |    
T  23445375 aggtttgatgtttaacattattatgatttattgtttaatatttctttcattcgttttttaatgtatcaagtgctagatttttaggaaaatcaaatgcaac 23445474  T
Q  207 gtgttaaattttgtcttgcaaccaagaatc 236  Q
     | |||||||||| |||||| |||||||||    
T  23445475 atattaaattttggcttgcacccaagaatc 23445504  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 13753421 - 13753224
Alignment:
Q  12 tggatcgatatacagtctcaagaataatgactaaaaaattatt--gtgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataagg 109  Q
    ||||| ||||||||||| |||||||| |||| |||||||| ||  |||| |||||||||||||||||||||||||| |||| |||| ||||||||| |||    
T  13753421 tggattgatatacagtcccaagaatattgacaaaaaaattcttttgtgcgttgaatttattcaagaaagtgcttttgcctgcttaattatattcattagg 13753322  T
Q  110 tttgatgtttaacattattatgatttattg-tttaatatttctttgatccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgt 208  Q
    || ||||||||||| ||||| | ||||||| |||| || ||||||||||| ||||||||||||||| |||   ||||| | |||||||||||||||||||    
T  13753321 ttggatgtttaacaatattaaggtttattgctttattacttctttgatccttttttgaatgtatcaggtg--tgatttcttggaaaatcaaatgcatcgt 13753224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 13766824 - 13766627
Alignment:
Q  12 tggatcgatatacagtctcaagaataatgactaaaaaattatt--gtgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataagg 109  Q
    ||||| ||||||||||| |||||||| |||| |||||||| ||  |||| |||||||||||||||||||||||||| |||| |||| ||||||||| |||    
T  13766824 tggattgatatacagtcccaagaatattgacaaaaaaattcttttgtgcgttgaatttattcaagaaagtgcttttgcctgcttaattatattcattagg 13766725  T
Q  110 tttgatgtttaacattattatgatttattg-tttaatatttctttgatccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgt 208  Q
    || ||||||||||| ||||| | ||||||| |||| || ||||||||||| ||||||||||||||| |||   ||||| | |||||||||||||||||||    
T  13766724 ttggatgtttaacaatattaaggtttattgctttattacttctttgatccttttttgaatgtatcaggtg--tgatttcttggaaaatcaaatgcatcgt 13766627  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 14332162 - 14331977
Alignment:
Q  53 ttgtgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataaggtttgatgtttaacattattatgatttattgtttaat-atttct 151  Q
    |||||| ||||||||  | ||||||||| ||||  ||| ||||||||||| ||||  ||||||||||||   ||||||| ||||||||||||| ||||||    
T  14332162 ttgtgcgttgaatttccttaagaaagtgtttttgtctgcttaagtatattgataaaatttgatgtttaattgtattatggtttattgtttaattatttct 14332063  T
Q  152 ttgatccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtgttaaattttgtcttgcaaccaagaatct 237  Q
    ||||||| ||||||||||||  | || |||||||| ||||||||||| || ||||||| || |||||| |||||| ||| ||||||    
T  14332062 ttgatccctttttgaatgtaataggtactagatttctaggaaaatcatattcatcgtgctatattttggcttgcacccatgaatct 14331977  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 14325194 - 14325412
Alignment:
Q  18 gatatacagtctcaagaataatgactaaaaaattattgtgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataaggtttgatgt 117  Q
    |||||||| || ||| ||||||||| |||||| | || ||||| |||||||||| |  |||| |||||||||| ||||| |||||||  |||||||||||    
T  14325194 gatatacattcccaataataatgac-aaaaaactcttatgcatcgaatttattcgatgaagttctttttcctgcttaagaatattcacgaggtttgatgt 14325292  T
Q  118 ttaacattattatgatttattg-tttaatatttctttgatccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtgttaaatt 216  Q
    |||||| ||||||| ||||||| |||| |||| ||||||||  ||| |||||||||||| |  |||| || ||||||| ||| |||| ||||| || |||    
T  14325293 ttaacaatattatggtttattgttttattattactttgatcattttgtgaatgtatcaa-tattagaattctaggaaattcatatgcttcgtgctatatt 14325391  T
Q  217 ttgtcttgcaaccaagaatct 237  Q
    ||| |||| | ||||||||||    
T  14325392 ttggcttgtatccaagaatct 14325412  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 14330984 - 14331165
Alignment:
Q  56 tgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataaggtttgatgtttaacattattatgatttattg-tttaatatttctttg 154  Q
    ||||| |||||||||| |  |||| |||||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||| |||| |||| |||||    
T  14330984 tgcatcgaatttattcgatgaagttctttttcctgcttaagaatattcatgaggtttgatgtttaacaatattatggtttattgttttattattactttg 14331083  T
Q  155 atccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtgttaaattttgtcttgcaaccaagaatct 237  Q
    |||  ||| |||||||||||| |  |||| || ||||||| ||| |||| ||||| || |||||| |||| | ||||||||||    
T  14331084 atcattttgtgaatgtatcaa-tattagaattctaggaaattcatatgcttcgtgctatattttggcttgtatccaagaatct 14331165  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 14334944 - 14335125
Alignment:
Q  56 tgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataaggtttgatgtttaacattattatgatttattg-tttaatatttctttg 154  Q
    ||||| |||||||||| |  |||| |||||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||| |||| |||| |||||    
T  14334944 tgcatcgaatttattcgatgaagttctttttcctgcttaagaatattcatgaggtttgatgtttaacaatattatggtttattgttttattattactttg 14335043  T
Q  155 atccatttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtgttaaattttgtcttgcaaccaagaatct 237  Q
    |||  ||| |||||||||||| |  |||| || ||||||| ||| |||| ||||| || |||||| |||| | ||||||||||    
T  14335044 atcattttgtgaatgtatcaa-tattagaattctaggaaattcatatgcttcgtgctatattttggcttgtatccaagaatct 14335125  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 13739787 - 13739676
Alignment:
Q  54 tgtgcattgaatttattcaagaaagtgctttttcctgattaagtatattcataaggtttgatgtttaacattattatgatttattg-tttaatatttctt 152  Q
    ||||| ||||||||||| |||||| | ||||| |||| ||||||||||||||||| |||||||||| | | ||||| | ||||||| |||| ||||||||    
T  13739787 tgtgcgttgaatttattgaagaaattacttttgcctgcttaagtatattcataagctttgatgtttgataatattaagctttattgttttattatttctt 13739688  T
Q  153 tgatccattttt 164  Q
    |||||| |||||    
T  13739687 tgatcctttttt 13739676  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 11616040 - 11615964
Alignment:
Q  160 tttttgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtgttaaattttgtcttgcaaccaagaatc 236  Q
    ||||| ||||||||| ||| |||||||| ||||||||||||||||||||| ||| ||||| ||| || | |||||||    
T  11616040 ttttttaatgtatcaggtgttagattttaaggaaaatcaaatgcatcgtgctaacttttggcttacaccaaagaatc 11615964  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 11605220 - 11605290
Alignment:
Q  166 aatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtgttaaattttgtcttgcaaccaagaatc 236  Q
    ||||||||| ||||||||||| || ||||||||||||||||||   |||||||| ||| || |||||||||    
T  11605220 aatgtatcaggtgctagatttctacgaaaatcaaatgcatcgtacaaaattttggcttacacccaagaatc 11605290  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 11605145 - 11605205
Alignment:
Q  53 ttgtgcattgaatttattcaagaaagtgctttttcctgattaagtata-ttcataaggttt 112  Q
    |||||| |||||||||||| |||| ||| |||||| || ||||||||| ||||||||||||    
T  11605145 ttgtgctttgaatttattctagaatgtgatttttcttgcttaagtatatttcataaggttt 11605205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 35078766 - 35078918
Alignment:
Q  60 ttgaatttattcaagaaagtgctttttcctgattaagtatatt-cataaggtttgatgtttaacattattatgatttattgtttaat-atttctttgatc 157  Q
    ||||||||||||||||| ||| |||| |||||||||||||||| ||||| ||||| ||||||||| ||||| | |||||||||| || |||| |||||||    
T  35078766 ttgaatttattcaagaatgtgattttgcctgattaagtatatttcataatgtttgttgtttaacaatattaaggtttattgttttattatttatttgatc 35078865  T
Q  158 catttt-tgaatgtatcaagtgctagatttttaggaaaatcaaatgcatcgtg 209  Q
    | |||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  35078866 cgttttttgaatgtatcaggtgctagatttctaggaaaatcaaatgcatcgtg 35078918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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