View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_high_49 (Length: 249)
Name: NF19563_high_49
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 7710427 - 7710615
Alignment:
| Q |
54 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
153 |
Q |
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| T |
7710427 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
7710526 |
T |
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| Q |
154 |
attagccatagcattgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcatattcttg |
242 |
Q |
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| T |
7710527 |
attagccatagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttg |
7710615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 7732738 - 7732925
Alignment:
| Q |
54 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||| ||||||||| ||||||| ||||||||| |
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| T |
7732738 |
gtcaattaaaaaagattaaataatgtatcagattatacattttctacacatattcatttctttaaaaaggaa-cccttcacagacattaaacactcatcc |
7732836 |
T |
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| Q |
154 |
attagccatagcattgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcatattcttg |
242 |
Q |
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| T |
7732837 |
attaccaatagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttg |
7732925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 7725329 - 7725515
Alignment:
| Q |
54 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
153 |
Q |
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||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
7725329 |
gtcaattaaaaaagattaaatga-gtataagattatacattttcttcacatattcatttctataaaaaggaa-cccttcacatacattaatcactcatcc |
7725426 |
T |
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| Q |
154 |
attagccatagcattgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcatattcttg |
242 |
Q |
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| T |
7725427 |
attagcaatagcattgaactcacaatggcttcttttgctacacttttctcctctctaattctcacagtagcccttctctcattttcttg |
7725515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 7747154 - 7746987
Alignment:
| Q |
67 |
gattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatccattagccatagca |
166 |
Q |
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| T |
7747154 |
gattaaataatgtatgagattatacattttcttcacatatttatttctataaaaaggaa-cccttcacatacattaatcactcatccattagcaatagca |
7747056 |
T |
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| Q |
167 |
ttgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcat |
235 |
Q |
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|||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| | ||||||||| |
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| T |
7747055 |
ttgaactcacaatggcttcttttgttacacttttctcctccctaactctcacaatagtccttctctcat |
7746987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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