View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_high_59 (Length: 234)

Name: NF19563_high_59
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_high_59
NF19563_high_59
[»] chr7 (6 HSPs)
chr7 (15-218)||(17735798-17736001)
chr7 (15-218)||(17708144-17708347)
chr7 (15-218)||(17717968-17718171)
chr7 (15-218)||(16722021-16722224)
chr7 (15-218)||(17699035-17699238)
chr7 (15-218)||(17744979-17745181)
[»] chr3 (15 HSPs)
chr3 (56-199)||(46483960-46484103)
chr3 (45-199)||(46473830-46473984)
chr3 (44-218)||(46531819-46531993)
chr3 (43-199)||(46479689-46479845)
chr3 (68-218)||(46549038-46549188)
chr3 (43-172)||(46544356-46544485)
chr3 (43-218)||(46490608-46490783)
chr3 (40-177)||(46554279-46554416)
chr3 (56-210)||(5156157-5156311)
chr3 (66-210)||(46526484-46526627)
chr3 (45-117)||(46538886-46538958)
chr3 (43-210)||(5160174-5160340)
chr3 (66-210)||(45902876-45903020)
chr3 (95-162)||(45883842-45883909)
chr3 (68-138)||(51943814-51943884)
[»] chr4 (3 HSPs)
chr4 (43-187)||(15555911-15556055)
chr4 (66-186)||(35162361-35162481)
chr4 (68-174)||(35155342-35155448)
[»] chr8 (2 HSPs)
chr8 (68-177)||(9692810-9692919)
chr8 (66-177)||(9675788-9675899)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 17735798 - 17736001
Alignment:
Q  15 tatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17735798 tatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 17735897  T
Q  115 gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17735898 gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttac 17735997  T
Q  215 tttt 218  Q
    ||||    
T  17735998 tttt 17736001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 17708144 - 17708347
Alignment:
Q  15 tatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 114  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708144 tatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 17708243  T
Q  115 gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttac 214  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  17708244 gaccagcaagaatgatcagtttatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttac 17708343  T
Q  215 tttt 218  Q
    ||||    
T  17708344 tttt 17708347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 17717968 - 17718171
Alignment:
Q  15 tatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 114  Q
    |||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17717968 tatatttcaaaggagtgtggaaacaaccctttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 17718067  T
Q  115 gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttac 214  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  17718068 gaccagcaagaatgatcagtttatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttac 17718167  T
Q  215 tttt 218  Q
    ||||    
T  17718168 tttt 17718171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 16722021 - 16722224
Alignment:
Q  15 tatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 114  Q
    |||| ||||||||||| ||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16722021 tatatttcaaaggagtgtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccatttat 16722120  T
Q  115 gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttac 214  Q
    ||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  16722121 gaccagcaagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttac 16722220  T
Q  215 tttt 218  Q
    ||||    
T  16722221 tttt 16722224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 17699035 - 17699238
Alignment:
Q  15 tatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 114  Q
    |||| ||||||||||| ||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17699035 tatatttcaaaggagtgtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccatttat 17699134  T
Q  115 gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttac 214  Q
    ||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  17699135 gaccagcaagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttac 17699234  T
Q  215 tttt 218  Q
    ||||    
T  17699235 tttt 17699238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 17744979 - 17745181
Alignment:
Q  15 tatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttat 114  Q
    |||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  17744979 tatacttcaaaggagtatggaaacaaaagtttgatacttcaaaaacgaaggactatgattttgaccttcttaacggcaagtcagtaaaggttccctttat 17745078  T
Q  115 gaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttac 214  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||| |||  |||||||||||||||||||    
T  17745079 gaccagcaagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttcc-tataaacaaggcaaagatgggcgtgcattctctatttac 17745177  T
Q  215 tttt 218  Q
    ||||    
T  17745178 tttt 17745181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 46483960 - 46484103
Alignment:
Q  56 aaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggtt 155  Q
    ||||| || |||||||||||| |||||||||||||||  ||||| ||||||||||||||||| |||||||| || |||||||| ||  ||||||||||||    
T  46483960 aaaacaaaagactatgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaagaagaagcagtttattagagcttttgatggtt 46484059  T
Q  156 ttaaagtccttggtcttccttacaaacaaggcaatgataagcgt 199  Q
    ||||||| |||||||||||||| || |||||| | |||||||||    
T  46484060 ttaaagttcttggtcttccttataagcaaggcgaagataagcgt 46484103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 46473830 - 46473984
Alignment:
Q  45 ttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttc 144  Q
    ||||| |||||| ||| || |||||||||||| |||||||||||||||  ||||| |||||| |||||||||| |||||||| || |||||||| ||  |    
T  46473830 ttgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagttaaggtttcctttatgactagcaagaagaagcagtttattagagc 46473929  T
Q  145 ttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgt 199  Q
    |||||||||||||||||| |||||||||||||| || |||||| | |||||||||    
T  46473930 ttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgt 46473984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 46531819 - 46531993
Alignment:
Q  44 tttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagtt 143  Q
    |||||| |||||||||| || ||| |||||||| ||||||||  |||||  ||| | ||||||||||| ||||| |||||||| || |||||||| | |     
T  46531819 tttgatgcttcaaaaacaaaagaccatgattttcaccttctcggtggcagctcaattaaggttcccttcatgactagcaagaagaagcagtttataaatg 46531918  T
Q  144 cttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttactttt 218  Q
    ||||||||||||||||  ||||| |||||||||| || |||||||| ||||  |||  ||||||||| |||||||    
T  46531919 cttttgatggttttaagatccttcgtcttccttataagcaaggcaacgatattcgtcaattctctatgtactttt 46531993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 46479689 - 46479845
Alignment:
Q  43 gtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagt 142  Q
    ||||||| ||||||||||| | ||||| || ||| ||||| | ||||| |   |||| ||||||||||| |||||||||||||| || |||||||| ||     
T  46479689 gtttgatgcttcaaaaacggaagactacgagtttcaccttttgaatggtagcccagtcaaggttcccttcatgaccagcaagaagaagcagtttattaga 46479788  T
Q  143 tcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgt 199  Q
     ||||||||||||||||||| || ||||||||||| || |||||| | |||||||||    
T  46479789 gcttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataagcgt 46479845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 46549188 - 46549038
Alignment:
Q  68 tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttg 167  Q
    ||||||||| |||||||||||||||  || || ||||||||||| || ||||||| |||| ||||||||||||||  |||||||||||| ||||| |||     
T  46549188 tatgattttcaccttctcaatggcagctcggtcaaggttcccttcataaccagcaggaatgatcagtttatcagtgtttttgatggtttcaaagttcttt 46549089  T
Q  168 gtcttccttacaaacaaggcaatgataagcgtgcattctctatttactttt 218  Q
     ||||||||| ||| |||| || ||||| ||   ||||||||| |||||||    
T  46549088 atcttccttataaataaggaaaagataaacgacaattctctatgtactttt 46549038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 46544356 - 46544485
Alignment:
Q  43 gtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagt 142  Q
    |||||||||||||||||| || |||||||||||| |||||||||||||||    ||| |||||||| || ||||| |||| ||| |  || |||||||||    
T  46544356 gtttgatacttcaaaaacaaaagactatgattttaaccttctcaatggcagccaagtcaaggttcctttcatgacaagcatgaagagacaatttatcagt 46544455  T
Q  143 tcttttgatggttttaaagtccttggtctt 172  Q
      |||||||||||||||||||||| |||||    
T  46544456 gtttttgatggttttaaagtccttcgtctt 46544485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 46490608 - 46490783
Alignment:
Q  43 gtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagt 142  Q
    ||||||| ||||||||||||| |||||||||||| ||||| | |||||||  ||| | ||||||||||| ||||| |||||| |  | || | ||| ||     
T  46490608 gtttgatgcttcaaaaacgaaagactatgattttcaccttttgaatggcagctcaattaaggttcccttcatgactagcaaggaagaacaatatattaga 46490707  T
Q  143 tcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttactttt 218  Q
     |||| |||| ||||||||| ||||| |||||||| || |||||| | |||||||||| |||  |||| |||||||    
T  46490708 gctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtgaatttactatgtactttt 46490783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 46554416 - 46554279
Alignment:
Q  40 accgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatc 139  Q
    |||||||||  ||||| |||| || |||||||||||| |||||||  |||| |  ||| | ||||||||||| | |||||||| | | | ||||||||||    
T  46554416 accgtttgacgcttcagaaacaaaagactatgattttcaccttcttgatggtagctcattcaaggttcccttcaagaccagcagggagagtcagtttatc 46554317  T
Q  140 agttcttttgatggttttaaagtccttggtcttcctta 177  Q
    |||  ||||||||||||||| |||||| ||||||||||    
T  46554316 agtgtttttgatggttttaaggtccttcgtcttcctta 46554279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 5156157 - 5156311
Alignment:
Q  56 aaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggtt 155  Q
    |||||||| |||||||||||| ||||| | |||||||  || || ||||||||||| ||||||||| || | |||||||||||     ||| || ||| |    
T  5156157 aaaacgaaagactatgattttcaccttttgaatggcagctcggtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatggtggct 5156256  T
Q  156 ttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctat 210  Q
    ||||||| ||| ||||||| || ||| ||||||| |||||||||  |||||||||    
T  5156257 ttaaagttcttcgtcttccgtataaaaaaggcaaagataagcgtcgattctctat 5156311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 46526627 - 46526484
Alignment:
Q  66 actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct 165  Q
    ||||||||||| ||||| | |||||||  ||||| ||||||||||| ||||||||| ||||||  || |||||||||  ||| |||||||| ||||| ||    
T  46526627 actatgattttcacctt-taaatggcagctcagtcaaggttcccttcatgaccagcgagaatagacaatttatcagtgttttcgatggtttcaaagtact 46526529  T
Q  166 tggtcttccttacaaacaaggcaatgataagcgtgcattctctat 210  Q
      |||||||||| || |||||  | |||||||||  |||||||||    
T  46526528 ccgtcttccttataagcaaggagaagataagcgtcaattctctat 46526484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 46538886 - 46538958
Alignment:
Q  45 ttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgac 117  Q
    |||||||||||||||| || |||||||||||| ||||||| |||||||  ||||| ||||||||||| |||||    
T  46538886 ttgatacttcaaaaacaaaagactatgattttaaccttcttaatggcagctcagtcaaggttcccttcatgac 46538958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 5160174 - 5160340
Alignment:
Q  43 gtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagt 142  Q
    |||||||  ||| |||||||| |||||||||||| ||||| | ||||| |  ||||| ||||||||||| ||||||||| || | |||||||||||        
T  5160174 gtttgatgtttcgaaaacgaaagactatgattttcaccttttgaatgg-agctcagtcaaggttcccttcatgaccagcgaggagaatcagtttattgaa 5160272  T
Q  143 tcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctat 210  Q
     ||| ||| |  |||||||| ||| ||||||| || ||  ||||||| ||||||||| ||||||||||    
T  5160273 gcttatgacgactttaaagttcttcgtcttccgtataagaaaggcaaagataagcgtccattctctat 5160340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 45902876 - 45903020
Alignment:
Q  66 actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct 165  Q
    ||||| ||||| ||||||| ||||| |  ||||| ||||||||||| ||||||||| |||| |  ||||||||| |   ||| |||||||| ||||| ||    
T  45902876 actataatttttaccttctaaatggtagctcagtcaaggttcccttcatgaccagcgagaagaggcagtttatccgcgttttcgatggtttcaaagtact 45902975  T
Q  166 tggtcttccttacaaacaaggcaatgataagcgtgcattctctat 210  Q
    | ||||||||||  | |||||  | |||||||||  |||||||||    
T  45902976 tcgtcttccttatgagcaaggagaagataagcgtcaattctctat 45903020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 45883909 - 45883842
Alignment:
Q  95 tcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagt 162  Q
    ||||| || |||||||| ||||||||||||||  |||| ||||| ||  |||||||||||||||||||    
T  45883909 tcagtcaaagttcccttcatgaccagcaagaaagatcaatttattagagcttttgatggttttaaagt 45883842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 51943814 - 51943884
Alignment:
Q  68 tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttat 138  Q
    ||||||||| ||||||| ||||| |  ||||| ||||||||||| ||||||||||| || || ||||||||    
T  51943814 tatgattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagcaataagaagcagtttat 51943884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 15555911 - 15556055
Alignment:
Q  43 gtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagt 142  Q
    ||||||| |||| |||||||| |||||||||||| ||||||||||||| |  ||| | |||||||| ||||||| ||||||  |  |||| | |||  ||    
T  15555911 gtttgatgcttccaaaacgaaagactatgattttcaccttctcaatggtagctcactcaaggttccgtttatgagcagcaaagaggatcaatatattggt 15556010  T
Q  143 tcttttgatggttttaaagtccttggtcttccttacaaacaaggc 187  Q
     ||||||||||||| ||||| ||| |||||| ||| |||||||||    
T  15556011 gcttttgatggtttcaaagtactttgtcttcattataaacaaggc 15556055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 35162361 - 35162481
Alignment:
Q  66 actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct 165  Q
    ||||||||||| ||||||| ||||| |  ||||| ||||||||||| ||||| | |||   | |||||||||| ||  ||||||||||||||||||| ||    
T  35162361 actatgattttcaccttctgaatggaagctcagtcaaggttcccttcatgactaccaaccttgatcagtttattagagcttttgatggttttaaagttct 35162460  T
Q  166 tggtcttccttacaaacaagg 186  Q
    | |||||||||| || |||||    
T  35162461 tcgtcttccttataagcaagg 35162481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 35155342 - 35155448
Alignment:
Q  68 tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttg 167  Q
    ||||||||| ||||||| |||||||  ||||| ||||||||||| ||||||||||    | |||| ||||| ||  ||||||||||||||||||| |||     
T  35155342 tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcaatttattagagcttttgatggttttaaagttcttc 35155441  T
Q  168 gtcttcc 174  Q
    |||||||    
T  35155442 gtcttcc 35155448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 9692919 - 9692810
Alignment:
Q  68 tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttg 167  Q
    ||||||||| ||||||  |||||||  ||||| |||||||| ||||||| ||||||   | |||||||||| ||  ||||||||||||||||||| |||     
T  9692919 tatgattttcaccttccgaatggcagctcagtcaaggttccttttatgagcagcaaccttgatcagtttattagagcttttgatggttttaaagttcttc 9692820  T
Q  168 gtcttcctta 177  Q
    ||||||||||    
T  9692819 gtcttcctta 9692810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 9675899 - 9675788
Alignment:
Q  66 actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct 165  Q
    ||||||||||| ||||||| |||||||  ||||| || ||||||||||||| || |||   | |||||||||| ||  ||||||||||||||||||| ||    
T  9675899 actatgattttcaccttctgaatggcagctcagtcaaagttccctttatgagcaccaaccttgatcagtttattagagcttttgatggttttaaagtgct 9675800  T
Q  166 tggtcttcctta 177  Q
    | |||| |||||    
T  9675799 ttgtctccctta 9675788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University