View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_high_60 (Length: 230)

Name: NF19563_high_60
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_high_60
NF19563_high_60
[»] chr3 (30 HSPs)
chr3 (23-218)||(17941738-17941933)
chr3 (25-218)||(18015880-18016073)
chr3 (25-218)||(18115751-18115944)
chr3 (25-218)||(19461318-19461511)
chr3 (25-217)||(19413970-19414162)
chr3 (25-218)||(18146616-18146809)
chr3 (25-218)||(19424402-19424595)
chr3 (22-218)||(14896411-14896607)
chr3 (25-218)||(19399494-19399687)
chr3 (25-212)||(17727708-17727894)
chr3 (25-206)||(17941524-17941702)
chr3 (25-212)||(19028937-19029123)
chr3 (32-218)||(19333802-19333988)
chr3 (25-217)||(19375480-19375672)
chr3 (25-219)||(19351180-19351374)
chr3 (25-218)||(19436816-19437009)
chr3 (35-218)||(17949624-17949807)
chr3 (25-184)||(18022588-18022747)
chr3 (25-218)||(19392935-19393128)
chr3 (36-218)||(18108236-18108418)
chr3 (24-217)||(25462835-25463028)
chr3 (25-217)||(19380679-19380871)
chr3 (31-218)||(18103222-18103397)
chr3 (25-203)||(18164942-18165120)
chr3 (22-212)||(16677002-16677192)
chr3 (22-146)||(24493511-24493635)
chr3 (34-121)||(18144037-18144124)
chr3 (25-92)||(19436654-19436721)
chr3 (151-218)||(18144141-18144208)
chr3 (186-218)||(19407112-19407144)
[»] scaffold0640 (1 HSPs)
scaffold0640 (25-218)||(5189-5382)
[»] chr8 (1 HSPs)
chr8 (25-218)||(8459262-8459455)
[»] chr4 (2 HSPs)
chr4 (27-217)||(2710598-2710788)
chr4 (25-206)||(15532137-15532318)
[»] scaffold2156 (1 HSPs)
scaffold2156 (25-146)||(21-142)
[»] chr6 (1 HSPs)
chr6 (25-206)||(13666911-13667094)
[»] scaffold0648 (1 HSPs)
scaffold0648 (85-218)||(4124-4257)
[»] scaffold0274 (1 HSPs)
scaffold0274 (85-218)||(3594-3727)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 17941738 - 17941933
Alignment:
23 ctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcacc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
17941738 ctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggttttttaatctcacc 17941837  T
123 aaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
17941838 aaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctttatctc 17941933  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 18015880 - 18016073
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||||    
18015880 catctgttgagtatttgaatttgccttcacttgtaactctttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 18015979  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    ||||||||| | ||||||||||    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
18015980 agatctcacctctcttgacctttcatatagcaatatacatggtgagataccttctagcttgctaaaccttcaaaatttgagacaacttcatctc 18016073  T

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Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 18115751 - 18115944
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||  ||||||||||| |||||||||||||||||||||| |||||    
18115751 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaa 18115850  T
125 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
18115851 agatctcacttatcttgacctttcac-agagtaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctc 18115944  T

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Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 19461318 - 19461511
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||  ||||||||||| ||||||||||||||||||||||||||||    
19461318 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaa 19461417  T
125 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||||||||||||||||||| ||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
19461418 agatctcacttatcttgacctttcac-agagtaatatatacggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctc 19461511  T

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Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 19413970 - 19414162
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| ||||| ||||||||||||||||| |||||||||||  |||||||   |||||  ||||||||||||||||||||||||||||||||||||||||    
19413970 catctgttgagcatttgaatttgtcttcaattgtaactcttgatctttcttacaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 19414069  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 217  Q
    ||||||||| | ||||||||||    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
19414070 agatctcacctctcttgacctttcatatagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 19414162  T

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Target: chr3; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 18146616 - 18146809
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||||||| |||||||||||||||||||||| ||||||||  |||||| ||||| ||  | ||||||||| |||||||||||| ||||||||| |||||    
18146616 catctattgggtatttgaatttgtcttcacttataactcttgatctttcaggaaataatttaacctctcatttacctgatgggtattttaatcttaccaa 18146715  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||| |||  ||||||  |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
18146716 agatatcaactatcttagccttgaggagagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctc 18146809  T

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Target: chr3; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 19424402 - 19424595
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    |||| |||||||||||||||||||||||| ||||||| |||  |||||||   |||||  || |||||||| ||||||||||||||||||||||||||||    
19424402 catcaattgagtatttgaatttgtcttcaattgtaacacttgatctttctttcaacaatttcgcctctcatttacctgatgggttttttaatctcaccaa 19424501  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    ||||||||| ||||||   |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||    
19424502 agatctcacctatcttagacttcaccagagcaatatacatggtgggataccttcaagcttgctaaaccttcaaaatttgacataccttgatctc 19424595  T

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Target: chr3; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 14896607 - 14896411
Alignment:
22 actcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcac 121  Q
    |||||||| ||||||||||||||||||||||| |||||| ||||  |||||||  ||||||  ||||||||||| | ||  |||||||||||||||||||    
14896607 actcatcttttgagtatttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctcatttgccaaatgggttttttaatctcac 14896508  T
122 caaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
     ||| ||||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||    
14896507 aaaaaatctcacctatctttaccttcatgaaagcaatatacatggtgagataccttcaagcttgctaaaccttcaaattttaagacaccttgatctc 14896411  T

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Target: chr3; HSP #9
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 19399494 - 19399687
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||    |||||  |||||| ||||||||||||||||||||||||| |||||||    
19399494 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 19399593  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    ||||||||| | |||| ||||| || | | ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||    
19399594 agatctcacctgtctttaccttgacaataacaatatatatggtgagataccttcaagcttgctaacccttcaaaatttgaaacaccttgatctc 19399687  T

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Target: chr3; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 17727894 - 17727708
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||    ||| |  ||||||||||  | |||| ||| |||||||||||||||||    
17727894 catctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggtggattttttaatctcaccaa 17727796  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctt 212  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||    
17727795 agatctcacctatgttgaccttcacgagagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaacacacctt 17727708  T

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Target: chr3; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 17941524 - 17941702
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||    
17941524 catctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatttcacctcttatatacctgatgggttttttaatctcaccaa 17941623  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga 206  Q
    | |||||||||||||| ||||||  | |||||||||| |   ||| |||||||||||||| ||||||||||| || ||||||    
17941624 aaatctcacttatctttaccttcgggggagcaatatata---tgatataccttcaagcttactaaaccttcagaaattgaga 17941702  T

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Target: chr3; HSP #12
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 19029123 - 19028937
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||    ||| |  ||||||||||  | |||| ||| |||||||||||||||||    
19029123 catctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggtggattttttaatctcaccaa 19029025  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctt 212  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||    
19029024 agatctcacctatgttgaccttcacgagagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaacacacctt 19028937  T

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Target: chr3; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 19333802 - 19333988
Alignment:
32 tgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatctc 131  Q
    |||||||||||||||||||||| |||||||||||  ||||||| |||||||  | ||||||||| ||| ||||||||||||||||||  |||||||||||    
19333802 tgagtatttgaatttgtcttcaattgtaactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatctttccaaagatctc 19333901  T
132 acttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |  ||||| ||||||     || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
19333902 aagtatctcgacctttcttggaacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 19333988  T

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Target: chr3; HSP #14
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 19375480 - 19375672
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| |||||| |||||||||||||||| |||||| ||||  |||||||  ||||||  |||||| |||| ||||||||||||||||||||||||||||    
19375480 catctgttgagtttttgaatttgtcttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaa 19375579  T
125 agatctcacttatcttgaccttcacga-gagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 217  Q
    |||| |||| ||||||||||||  ||| ||  |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
19375580 agatatcacctatcttgacctt-gcgatgaataatatatatggtgagataccttcaagcttgctaaaccttccaaatttgagacaacttgatct 19375672  T

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Target: chr3; HSP #15
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 19351180 - 19351374
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||| | |||| ||  ||| || | || |||| |||||||||||||||||||||||    
19351180 catctgttgagtatttgaatttgtcttcacttgtaactcttgatctttttcgaaataacttcaactttaatttaccagatgggttttttaatctcaccaa 19351279  T
125 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctca 219  Q
    |||||||||||||||| ||| ||||| | || |||||| ||||| |||||||||||||||| ||||||||||||||  ||||||||||| ||||||    
19351280 agatctcacttatcttcacctttcac-aaagtaatatatatggtaagataccttcaagcttactaaaccttcaaaaactgagacaccttgatctca 19351374  T

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Target: chr3; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 19436816 - 19437009
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||| |  ||| |  ||||||||||  |||| |||||||||||||||||||||||    
19436816 catctattcagtatttaaatttgtcttcacttgtaactctttatctttcagataacgatttcacctctcacttaccggatgggttttttaatctcaccaa 19436915  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    ||||||||| | |||| |||||      | |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||    
19436916 agatctcacctctctttacctttcgtttaacaatattcatggggagataccttctagcttgctaaaccttcaaaatttgagacaccttgatctc 19437009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 17949624 - 17949807
Alignment:
35 gtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatctcact 134  Q
    |||||||||||| ||||||||||||||||||| ||||  || ||||||  ||||||| ||| ||||  |||||||||| ||||||||||||||| ||||     
17949624 gtatttgaatttatcttcacttgtaactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagatatcacc 17949723  T
135 tatcttgacctt-cacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    | |||||||||| ||| | |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
17949724 tctcttgaccttgcactaaat-aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 17949807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 18022588 - 18022747
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||   |||||  ||||||||||| ||||  ||||||||||||||||||||||    
18022588 catctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggttttttaatctcaccaa 18022687  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 184  Q
    |||| |||  ||||||| |||    |||||||||||||||||||||||||||||||||||    
18022688 agatatcaactatcttgtcctcttagagagcaatatacatggtgagataccttcaagctt 18022747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 19392935 - 19393128
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||  |||||||| |||||||||||||||  ||||     
19392935 catcttttgagtatttgaatttgtcttcacttgtaactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatcgtaccac 19393034  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    | ||  ||| || ||| ||||| | |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||    
19393035 atatgccacctaccttcaccttaaggagagcaacatatatggtgagataccttcaagtttgctaaaccttcaaaatttgagataccttaatctc 19393128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 18108236 - 18108418
Alignment:
36 tatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatctcactt 135  Q
    ||||||||||||||||||||||||||||||  ||||  || ||||||  ||||||| ||| ||||  |||||||||| ||||||||||| ||| |||| |    
18108236 tatttgaatttgtcttcacttgtaactcttaatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaatgatatcacct 18108335  T
136 atcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
     ||||||||||     ||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
18108336 ctcttgaccttgcgctgaataatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 18108418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 25462835 - 25463028
Alignment:
24 tcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcacca 123  Q
    |||||||||| |||||||||||||||||| ||| ||||||||  |||||||   |||||  ||||||||||| |||||||||| |||||||||||| | |    
25462835 tcatctattgggtatttgaatttgtcttcgcttttaactcttgatctttcttacaacaacttcacctctcatttacctgatggtttttttaatctctcaa 25462934  T
124 aagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 217  Q
    ||||| |||  ||||||||||||      |  ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
25462935 aagatttcatgtatcttgacctttcatttaataatgtacatggtgacataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 25463028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 19380679 - 19380871
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||  ||||||||||  |||| |||||||| ||||||||||| ||    
19380679 catctgttgagtatttgaatttgtcttcacttgtaactctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcacgaa 19380778  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 217  Q
    |||| |||  | ||||    || | |  ||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||| ||||    
19380779 agatatcaactctcttagatttgagggtagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatct 19380871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 18103222 - 18103397
Alignment:
31 ttgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatct 130  Q
    |||||||||||||||||| |||| ||||||| |||  |||||| | ||||||  |||| | |||| ||| ||||||||||||||||||||||            
18103222 ttgagtatttgaatttgtattcaattgtaacccttgatctttcagaaaacaatttcacttttcatttacatgatgggttttttaatctcacc-------- 18103313  T
131 cacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
        |||||| |||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
18103314 ----tatcttcaccttcgcgataacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 18103397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 18164942 - 18165120
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| || ||||| |||||||||||||| |||||||||||  |||||||   ||| |  ||||||||||  ||| |||||| |||||||||||||||||    
18164942 catcttttaagtatgtgaatttgtcttcaattgtaactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcaccaa 18165041  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttg 203  Q
    |||| |||  | ||||  ||||   | || ||||||| |||||||||||||||||||||||||||| ||||||||||||    
18165042 agatatcaactttcttagcctttcagggaacaatataaatggtgagataccttcaagcttgctaaaacttcaaaatttg 18165120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 16677002 - 16677192
Alignment:
22 actcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcac 121  Q
    |||||||||||| |||||||||||  |||||| |||||||||||  |||||||   |||||  | |||| |||  |||   | |||||||| ||||||||    
16677002 actcatctattgggtatttgaattcctcttcaattgtaactcttgatctttcttacaacaatttaacctttcagttactaaacgggtttttaaatctcac 16677101  T
122 caaagatctcacttatcttgacctt-cacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctt 212  Q
    ||||||| |||   ||||||||||| || | ||  |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
16677102 caaagatatcaagcatcttgacctttcatg-gaataatatacatggtgagataccttcaagcttgttaaaccttcaacatttgagacacctt 16677192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 24493635 - 24493511
Alignment:
22 actcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcac 121  Q
    |||||| | ||||||||| |||||||||||||||||||||||||  |||||||| ||||||  ||| ||||||  ||||  |||  |||||||| |||||    
24493635 actcattttttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaatgcattttttaacctcac 24493536  T
122 caaagatctcacttatcttgacctt 146  Q
    ||||||| |||| ||||||| ||||    
24493535 caaagatatcacctatcttggcctt 24493511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 18144037 - 18144124
Alignment:
34 agtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcac 121  Q
    |||||||||||||||| ||| |||||||||||  |||||||  ||||||  ||||||||||| |||||||| ||||||||||||||||    
18144037 agtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttacctgataggttttttaatctcac 18144124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 19436654 - 19436721
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctct 92  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  |||||||||||||||| ||||||||    
19436654 catctgttgagtatttcaatttatcttcacttgtaactcttgatctttctggaaacaaattcacctct 19436721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 18144141 - 18144208
Alignment:
151 agagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||| || | |||| ||||| |||||    
18144141 agagtaatatatatggtgacttaccttcaagcttgctaaaccttcagaaatcgagataccttgatctc 18144208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 19407112 - 19407144
Alignment:
186 ctaaaccttcaaaatttgagacaccttcatctc 218  Q
    ||||||||||||||||||||||||||| |||||    
19407112 ctaaaccttcaaaatttgagacaccttgatctc 19407144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 5189 - 5382
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  | |||||  || ||||  |||||||||||||||| |||||    
5189 catctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaa 5288  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||| |||| | ||||||||||    | |  |||||| |||| ||||||||||| ||| ||||||||||||||||||||||||| ||| |||||    
5289 agatatcacctctcttgaccttgcgcaaaataatatatatggcgagataccttctagcatgctaaaccttcaaaatttgagacatcttgatctc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 8459262 - 8459455
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||  |||| |||| | ||||| |||||||||||||||| |||||    
8459262 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatctgaccaa 8459361  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||| |||| ||||||||||||   |   || ||||| |||| ||||| |||||||||||| || |||||| |||||||||||||||| |||||    
8459362 agatatcacctatcttgacctttcggtttgccatatatatggcgagatgccttcaagcttgttataccttccaaatttgagacaccttgatctc 8459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 2710788 - 2710598
Alignment:
27 tctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaag 126  Q
    |||||||  ||||||||||||||||||||| ||||||||   |||||| | |||||  ||||||||| | ||||  |||||||||||||||||||||||     
2710788 tctattgcatatttgaatttgtcttcacttataactcttgaactttcttggaacaacttcacctctcctttaccaaatgggttttttaatctcaccaaac 2710689  T
127 atctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 217  Q
    |  |||  ||||||||||||    | |||||||||||||||||||||||||| |||||| |||| |||| |||||||||||| ||| ||||    
2710688 acatcaactatcttgacctttcatatagcaatatacatggtgagataccttctagcttgttaaagcttcgaaatttgagacaactttatct 2710598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 15532137 - 15532318
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||| | |||||  ||| |  |||| ||||  ||||||||||||||||  ||||    
15532137 catctatcgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcagccatcatttaccaaatgggttttttaatctttccaa 15532236  T
125 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga 206  Q
    | |||||| |||||||||||||    | |  ||||||| || ||||||||||||||| |||||||| |||||||||||||||    
15532237 atatctcaattatcttgacctttcaaaaaataatatacttgatgagataccttcaagtttgctaaatcttcaaaatttgaga 15532318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 142 - 21
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  | |||||  || ||||  |||||||||||||||| |||||    
142 catctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaa 43  T
125 agatctcacttatcttgacctt 146  Q
    |||| |||| | ||||||||||    
42 agatatcacctctcttgacctt 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 13667094 - 13666911
Alignment:
25 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 124  Q
    ||||| |||||||||||||||||||||| || |||||||||  |||||||| ||||||  ||||||||||||||||| ||| ||||||||||||||||||    
13667094 catctcttgagtatttgaatttgtcttcgctggtaactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcaccaa 13666995  T
125 agatctcacttatcttgacc-ttcacgagagca--atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga 206  Q
    | |||||||   | |||||| ||||| | || |  ||||| ||||| | |||||||||| |||||||||| |||||| |||||||    
13666994 aaatctcaccactgttgacctttcac-atagtaatatatatatggtaaaataccttcaaccttgctaaacattcaaactttgaga 13666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 4257 - 4124
Alignment:
85 tcacctctcatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 184  Q
    |||||||| || ||||  |||||||||||||||||||||||||| |||| | ||||||||||    | |  |||||| ||||||||||||||   |||||    
4257 tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt 4158  T
185 gctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||||||||||||||||||||||| ||| |||||    
4157 gctaaaccttcaaaatttgagacatcttgatctc 4124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 3727 - 3594
Alignment:
85 tcacctctcatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 184  Q
    |||||||| || ||||  |||||||||||||||||||||||||| |||| | ||||||||||    | |  |||||| ||||||||||||||   |||||    
3727 tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt 3628  T
185 gctaaaccttcaaaatttgagacaccttcatctc 218  Q
    |||||||||||||||||||||||| ||| |||||    
3627 gctaaaccttcaaaatttgagacatcttgatctc 3594  T

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