View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_high_67 (Length: 214)
Name: NF19563_high_67
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_high_67 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 33900895 - 33901081
Alignment:
| Q |
13 |
ttattctacttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaaccttact |
112 |
Q |
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| T |
33900895 |
ttattctacttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaaccttact |
33900994 |
T |
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| Q |
113 |
aactcttgatgatgataagggaaatgttataggtgaaagagaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgt |
199 |
Q |
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| T |
33900995 |
aactcttgatgatgataagggaaatgttctaggtgaaagagaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgt |
33901081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 33918421 - 33918607
Alignment:
| Q |
13 |
ttattctacttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaaccttact |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918421 |
ttattctatttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaaccttact |
33918520 |
T |
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| Q |
113 |
aactcttgatgatgataagggaaatgttataggtgaaagagaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgt |
199 |
Q |
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| T |
33918521 |
aactcttgatgatgataagggaaatgttataggtgaaagagaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgt |
33918607 |
T |
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