View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_high_9 (Length: 482)
Name: NF19563_high_9
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 41531 - 41066
Alignment:
| Q |
1 |
aaaacaggaattcttgttactcactattaaactacgggacaagtttttgtccacaacatagactattaaaaatactaaaataccttttattttgcaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41531 |
aaaacaggaattcttgttactcactattaaactacgggacaagtttttgtccacaacatagactattaaaaatactaaaataccttttattttgcaatat |
41432 |
T |
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| Q |
101 |
aaaaatatcatctcactagtataattttgnnnnnnngaatcaaaggcacccacagtgtaactattttatctgcaaaatgtgccttttgctatacaatttg |
200 |
Q |
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| T |
41431 |
aaaaatatcatctcactagtataattttgttttgttgaatcaaaggcacccacagtgtaactattttatctgcaaaatgtgccttttgctatacaatttg |
41332 |
T |
|
| Q |
201 |
gttatcaaacgtgtatttccttcgttagtttggtcatcaaatatgtcttcagtcagtcagtccatgaaatggccctcaactaaaatatgtctttcatgtt |
300 |
Q |
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| T |
41331 |
gttatcaaacgtgtatttccttcgttagtttggtcatcaaatatgtcttcagtcagtcagtccatgaaatggccctcaactaaaatatgtctttcatgtt |
41232 |
T |
|
| Q |
301 |
aatatcttaaatcaaaattagaaaataaacagtcaatttaatcccaaaacaaaactatcaatttttcgtcaatttagtctctaaaccgttaaaatcaact |
400 |
Q |
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| T |
41231 |
aatatcttaaatcaaaattagaaaataaacagtcaatttaatcccaaaacaaaactatcaatttttcgtcaatttagtctctaaactgttaaaatcaact |
41132 |
T |
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| Q |
401 |
aaaatgtccctaaactatgctctcaatgtttaaaaagaatagaatagagaagaaccttgacagagt |
466 |
Q |
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| T |
41131 |
aaaatgtccctaaactatgctctcaatgtttaaaaagaatagaatagagaagaaccttgacagagt |
41066 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 46781682 - 46781727
Alignment:
| Q |
368 |
gtcaatttagtctctaaaccgttaaaatcaactaaaatgtccctaa |
413 |
Q |
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| T |
46781682 |
gtcaatttagtccctaatctattaaaatcaactaaaatgtccctaa |
46781727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 33726477 - 33726525
Alignment:
| Q |
370 |
caatttagtctctaaaccgttaaaatcaactaaaatgtccctaaactat |
418 |
Q |
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| T |
33726477 |
caatttagtcattaaactattaaaataaactaaaatgtccctaaactat |
33726525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 37160768 - 37160716
Alignment:
| Q |
352 |
aaactatcaatttttcgtcaatttagtctctaaaccgttaaaatcaactaaaa |
404 |
Q |
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||||||||| | | |||| |||||||||||||||| |||||||||||||||| |
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| T |
37160768 |
aaactatcattctctcgttaatttagtctctaaactattaaaatcaactaaaa |
37160716 |
T |
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