View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19563_low_1 (Length: 686)
Name: NF19563_low_1
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 9 - 671
Target Start/End: Original strand, 44269461 - 44270123
Alignment:
| Q |
9 |
aatattagagaaaagaaaccaactccagtcataagcaggacggtaggtgtgatcgtcgcagcaactccccatccatatttgttgaatataaattggctta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44269461 |
aatattagagaaaagaaaccaactccagtcataagcaggacggtaggtgtgatcgtcgcagcaactccccatccatatttgttgaatataaattggctta |
44269560 |
T |
|
| Q |
109 |
caagcatcattgtgaaggtagcgattccagttgcggttgagaaatcacccataaaggacgagtactcattcgggctaggaaactgcacaattttcagagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44269561 |
caagcatcattgtgaaggtagcgattccagttgcggttgagaaatcacccataaaggacgagtactcattcgggctaggaaactgcacaattttcagagg |
44269660 |
T |
|
| Q |
209 |
tgtgtatgagggagaaaaatagcacaacaaatagacagtaagaaaaccaaaactgaaacaagtgatatattacctgagctttgagctttgatttccatgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44269661 |
tgtgtatgagggagaaaaatagcacaacaaatagacagtaagaaaaccaaaactgaaacaagtgatatattacctgagctttgagctttgatttccatgt |
44269760 |
T |
|
| Q |
309 |
aacttcaacaagattaatgcttattccatatgcaaccactaatgtggcaagatcccttatatatcttgaagacatcaagaacttcaagctctccattgtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44269761 |
aacttcaacaagattaatgcttattccatatgcaaccactaatgtggcaagatcccttatatatcttgaagacatcaagaacttcaagctctccattgtt |
44269860 |
T |
|
| Q |
409 |
cccattttcggcttctcctgaaagaatgcaaaatgatgtaaaatataaatcacttcaaatattattggaaagtacatagttttctcaaattatggtatat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44269861 |
cccattttcggcttctcctgaaagaatgcaaaatgatgtaaaatataaatcacttcaaatattattggaaagtacatagttttctcaaattatggtatat |
44269960 |
T |
|
| Q |
509 |
taaaaagtaaaacaaggatatcaaatctctaggacaatgccttatgacacaaatacatgagccaatcatgctatagaaataaaaactatggtacaactta |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44269961 |
taaaaagtaaaacaaggatatcaaatctctaggacaatgccttatgacacaaatacatgagccaatcatgctatagaaataaaaactatggtacaactta |
44270060 |
T |
|
| Q |
609 |
gcatgaaaggcaaagtgtcccttcagggacatatcttgtatgctttccattagctgttcaata |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44270061 |
gcatgaaaggcaaagtgtcccttcagggacatatcttgtatgctttccattagctgttcaata |
44270123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 2810898 - 2810712
Alignment:
| Q |
9 |
aatattagagaaaagaaaccaactccagtcataagcaggacggtaggtgtgatcgtcgcagcaactccccatccatatttgttgaatataaattggctta |
108 |
Q |
| |
|
||||| ||||| |||||||||||||| |||| ||||||||| |||||||||||| | ||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
2810898 |
aatatgagagagaagaaaccaactccggtcagaagcaggactgtaggtgtgatcttggcagcaactccccatccatatttgtcaaatatatattgactta |
2810799 |
T |
|
| Q |
109 |
caagcatcattgtgaaggtagcgattccagttgcggttgagaaatcacccataaaggacgagtactcattcgggctaggaaactgca |
195 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||| ||||| || ||||| || || |||||||| || |||||||| ||||||| |
|
|
| T |
2810798 |
gaagcatcattatgaatgtagcaattccagttgcggtcgagaagtctcccatgaaagaagagtactcgttggggctagggaactgca |
2810712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 274 - 416
Target Start/End: Complemental strand, 2810623 - 2810481
Alignment:
| Q |
274 |
tatattacctgagctttgagctttgatttccatgtaacttcaacaagattaatgcttattccatatgcaaccactaatgtggcaagatcccttatatatc |
373 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| || || || |
|
|
| T |
2810623 |
tatattacctgagctttgagcttagacttccatgtaacctcaacaagattgatgctgattccataagcaaccactaaagtggctagatctctaatgtact |
2810524 |
T |
|
| Q |
374 |
ttgaagacatcaagaacttcaagctctccattgttcccatttt |
416 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
2810523 |
ttgaagacaccaagaatttcaagctctccattgttcccatttt |
2810481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University