View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_11 (Length: 453)
Name: NF19563_low_11
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 33 - 436
Target Start/End: Complemental strand, 29578982 - 29578571
Alignment:
| Q |
33 |
tcataaggatcatcaagatcataattaaccttaagacttgaagaa--------catttttcacatttgtatagtaagattcggtcccactaatttgtgaa |
124 |
Q |
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| T |
29578982 |
tcataaggattatcaagatcataattaaccttaagacttgaagaatatcaacacatttttcacattgatatagtaagatttggtcccactaatttgtgaa |
29578883 |
T |
|
| Q |
125 |
gtacgagttgcatccttggtaactagaataatctttttt-gtattatatgtggcaatgttaagcatagcggaaggaaccaaccaaatcatttaattcttt |
223 |
Q |
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| T |
29578882 |
gtacgagttgcatccttggtaactagaataatctttttttgtat-atatgtggcaatgttaagcatagctgaaggaaccaaccaaatcatttaattttct |
29578784 |
T |
|
| Q |
224 |
gagatacgaaaattcatttaaatggttgagatctctcaacagatactcttctttacacatcaattaaagatcgaactaattaccacatgcttaagagatt |
323 |
Q |
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| T |
29578783 |
aaagtacgaagattcatttaaatggttgagatctctcaacaaatactcttctatacatatcaactaaagatcgaactaattaccacatgcttaagagatt |
29578684 |
T |
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| Q |
324 |
caattatctatcaacggtcacactatgttggtcccaaatcaattatttaatatcttacaaaactatcatcataatgatcattaacaacttgaggaaaact |
423 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29578683 |
cagttatctatcaaccgtcacactatgttggtcccaaatcaattatttgatatcttacaaaactatcatcataatgatcattaacaacttgaggaaaacc |
29578584 |
T |
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| Q |
424 |
ccatggctctttc |
436 |
Q |
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| T |
29578583 |
ccatggctctttc |
29578571 |
T |
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