View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_14 (Length: 423)

Name: NF19563_low_14
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_14
NF19563_low_14
[»] chr7 (5 HSPs)
chr7 (186-407)||(45937710-45937931)
chr7 (31-177)||(45937963-45938112)
chr7 (186-341)||(297012-297167)
chr7 (186-341)||(293118-293274)
chr7 (190-287)||(22582380-22582480)
[»] chr8 (7 HSPs)
chr8 (186-341)||(37186829-37186984)
chr8 (267-347)||(37786745-37786825)
chr8 (186-289)||(37791193-37791295)
chr8 (267-347)||(37791301-37791381)
chr8 (186-289)||(37786622-37786725)
chr8 (186-289)||(11096119-11096220)
chr8 (31-112)||(37790983-37791063)
[»] chr4 (10 HSPs)
chr4 (30-159)||(5715442-5715575)
chr4 (31-121)||(5725716-5725805)
chr4 (267-347)||(5707100-5707180)
chr4 (187-289)||(53011149-53011251)
chr4 (186-289)||(53008257-53008360)
chr4 (212-289)||(56563179-56563256)
chr4 (294-341)||(50911747-50911794)
chr4 (294-341)||(50935544-50935591)
chr4 (186-247)||(5715325-5715386)
chr4 (186-287)||(50935647-50935743)
[»] chr3 (8 HSPs)
chr3 (187-348)||(28920312-28920473)
chr3 (31-121)||(18649486-18649575)
chr3 (186-289)||(4315552-4315655)
chr3 (267-347)||(18641093-18641173)
chr3 (186-289)||(531568-531671)
chr3 (186-274)||(32813593-32813681)
chr3 (221-289)||(55418408-55418476)
chr3 (33-112)||(41925118-41925196)
[»] chr2 (14 HSPs)
chr2 (31-287)||(29960346-29960601)
chr2 (267-347)||(302270-302350)
chr2 (186-289)||(21794528-21794631)
chr2 (186-289)||(45485826-45485929)
chr2 (269-347)||(29960258-29960336)
chr2 (186-287)||(302372-302473)
chr2 (186-289)||(295734-295837)
chr2 (186-341)||(39190688-39190843)
chr2 (186-289)||(43081675-43081778)
chr2 (186-289)||(18163923-18164026)
chr2 (267-341)||(295654-295728)
chr2 (200-289)||(13273295-13273380)
chr2 (31-112)||(295921-296000)
chr2 (31-110)||(302558-302636)
[»] chr1 (2 HSPs)
chr1 (264-347)||(44541492-44541575)
chr1 (186-239)||(44541400-44541453)
[»] scaffold0038 (3 HSPs)
scaffold0038 (186-313)||(49344-49474)
scaffold0038 (264-339)||(49262-49337)
scaffold0038 (66-156)||(49537-49628)
[»] chr6 (5 HSPs)
chr6 (186-313)||(28249182-28249312)
chr6 (264-339)||(28249100-28249175)
chr6 (66-156)||(28249375-28249466)
chr6 (186-289)||(31888483-31888586)
chr6 (186-275)||(7501407-7501496)
[»] chr5 (6 HSPs)
chr5 (186-286)||(9507626-9507726)
chr5 (186-287)||(34854045-34854146)
chr5 (271-347)||(689961-690036)
chr5 (186-286)||(32090199-32090299)
chr5 (186-289)||(9503641-9503744)
chr5 (31-112)||(690202-690282)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 186 - 407
Target Start/End: Complemental strand, 45937931 - 45937710
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  45937931 gtaacaaactcctctaactaactaactaccttggttaacacgctaaccaaggtttattactagaccctgcttttgaagacatcaaaagctgcacttcaga 45937832  T
Q  286 agctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaatatgtaatttatgtaaaatcgttagttttatctatttttg 385  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||     
T  45937831 agctcatgttcaaaagttgcactccagattctgaacaacagttattgattaatattctaatatgtaatttatgtaaaatcgttagttttatctattttta 45937732  T
Q  386 gtatttagatactagtctaaaa 407  Q
    ||||||||||||||||||||||    
T  45937731 gtatttagatactagtctaaaa 45937710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 45938112 - 45937963
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaa---gttgtaaaaac 127  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||   |||||||||||    
T  45938112 tgttagaacaattccctatgttctatgcacagcggaagtgcttatgaaaaataagatgtttctaagcaagatgaaaataacataaagttgttgtaaaaac 45938013  T
Q  128 tgaagagagaaaactaatgaatttttattgatcgttgatacttatttaca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45938012 tgaagagagaaaactaatgaatttttattgatcgttgatacttatttaca 45937963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 297167 - 297012
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||| ||||||||| | | || ||||||||||||||||||||| |||||    
T  297167 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttactaaactcagtttctgaagacatcagaagctgcacatcaga 297068  T
Q  286 agctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatatt 341  Q
    || | ||||||| ||||| |||| ||||  ||||||||||||||||||||||||||    
T  297067 agttgatgttcagaagctacacttcagaagctgaacaacagttattgattaatatt 297012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 293274 - 293118
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    ||||||||| |||||||| |||||| |||||||| ||||||| ||| ||| |||| ||||||||| | | || ||||||||||| ||||| ||| ||| |    
T  293274 gtaacaaacccctctaacaaactaactaccttggttaacacgctaaccaatgtttgttactaaactcagtttctgaagacatcaaaagctacacatcaaa 293175  T
Q  286 agc-tcatgttcaaaagctgcactccagattctgaacaacagttattgattaatatt 341  Q
    ||| || |||||| |||||||||| ||||  ||||||||||||||||||||||||||    
T  293174 agcttcttgttcagaagctgcacttcagaagctgaacaacagttattgattaatatt 293118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 22582380 - 22582480
Alignment:
Q  190 caaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaac---cctgcttttgaagacatcagaagctgcacttcagaa 286  Q
    |||||||||||||| |||||| |||||||| ||||||| ||| ||||||||||||||| ||    |||||||||||||||||||||| || |||||||||    
T  22582380 caaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgctgcttttgaagacatcagaagttgtacttcagaa 22582479  T
Q  287 g 287  Q
    |    
T  22582480 g 22582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 37186829 - 37186984
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||| ||| ||||||  ||  ||| ||||||||||| || |||||| | |||||||||||||||||||||||||    
T  37186829 gtaacaaactcctctaacaaactaactaccctggttaacactatagccaatgtttattactagactctgcttctaaagacatcagaagctgcacttcaga 37186928  T
Q  286 agctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatatt 341  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||    
T  37186929 agctcatgttcagaagctgcacttcagattctgaacaacaattattgattaatatt 37186984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 37786745 - 37786825
Alignment:
Q  267 tcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    ||||||||  ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  37786745 tcagaagcatcacttcagaagctcatgttcagaagctgcacttcagattctaaacaacagttattgattaatattccaata 37786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 37791193 - 37791295
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||| ||||| | |||||||||||  ||||| ||| |||||| ||||||||||||||||||||| |||||    
T  37791193 gtaacaaactcctctaacaaactaactaccttggttaacatgctaatcaaggttggttact-aactctgcttctgaagacatcagaagctgcacatcaga 37791291  T
Q  286 agct 289  Q
    ||||    
T  37791292 agct 37791295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 37791301 - 37791381
Alignment:
Q  267 tcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    |||||| | |||||||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||| |||||    
T  37791301 tcagaaacagcacttcagaagctcatgttcagaagttgcacttcatattctgaacaacagttattgattaatattccaata 37791381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 37786622 - 37786725
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||| ||||||||| |||||| |||| ||| ||||||| ||| |||||||  |||||| || |||||| ||||||||||| ||||||||| |||||    
T  37786622 gtaacaaagtcctctaacaaactaactaccctggttaacacgctaaccaaggttggttactagactctgcttatgaagacatcaaaagctgcacatcaga 37786721  T
Q  286 agct 289  Q
    ||||    
T  37786722 agct 37786725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 11096220 - 11096119
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||  ||||||| ||| ||| |||| |||||| |  || ||| ||||||||||||||||| ||| ||| |    
T  11096220 gtaacaaactcctctaacaaactaactaccttgattaacacgctaaccaaagtttgttactaga--ctccttctgaagacatcagaagctacacatcaaa 11096123  T
Q  286 agct 289  Q
    ||||    
T  11096122 agct 11096119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 37790983 - 37791063
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 112  Q
    |||||||||||| | ||||||||||||| |||||||| ||| |||| ||||||||| |||||   ||||||||||||||||||    
T  37790983 tgttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaaaataagctgtttaagagcaagatgaaaataaca 37791063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 5715575 - 5715442
Alignment:
Q  30 atgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaa---gttgtaaaaa 126  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||| |||   ||||||||||    
T  5715575 atgttagaacaattcactatgttctatgcacagtgaaagtgcttatgaaaaataagttgtttctaagcaagatg-aaataacataaagttgttgtaaaaa 5715477  T
Q  127 ctgaagaga--gaaaactaatgaatttttattgat 159  Q
    |||||||||   |||||||||||||||||||||||    
T  5715476 ctgaagagaagaaaaactaatgaatttttattgat 5715442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 5725716 - 5725805
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgt 121  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  5725716 tgttagaacaattcactatgttctatgcacagcagaagtgcttataaaaaataagttgtttctaagcaagatg-aaataacataaagttgt 5725805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 5707180 - 5707100
Alignment:
Q  267 tcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    ||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||||| |||||    
T  5707180 tcagaagctgcgcttcagaagctcatgttcagaagctacacttcagattctgaacaacaattattgattaatattccaata 5707100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 53011251 - 53011149
Alignment:
Q  187 taacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcagaa 286  Q
    ||||||| ||||||||| |||||| |||||||| ||||||| ||| ||| |||| |||||| || |||||| ||||||||||| ||||||||| ||||||    
T  53011251 taacaaaatcctctaacaaactaactaccttggttaacacgctaaccaatgtttgttactagactctgcttctgaagacatcataagctgcacatcagaa 53011152  T
Q  287 gct 289  Q
    |||    
T  53011151 gct 53011149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 53008360 - 53008257
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| ||  |||| ||| ||| ||| ||| |||| |||||| || |||||| |||||||||||||||||| ||||||||    
T  53008360 gtaacaaactcctctaacaaactaactagtttggttaatacgctaaccaatgtttgttactagactctgcttctgaagacatcagaagctgtacttcaga 53008261  T
Q  286 agct 289  Q
    ||||    
T  53008260 agct 53008257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 56563256 - 56563179
Alignment:
Q  212 taccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcagaagct 289  Q
    |||||||| ||||||| ||| |||||||| ||| || || |||||| ||||||||||||||||||||||||| |||||    
T  56563256 taccttggttaacacgctaaccaaggtttgttagtagactctgcttctgaagacatcagaagctgcacttcataagct 56563179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 50911794 - 50911747
Alignment:
Q  294 ttcaaaagctgcactccagattctgaacaacagttattgattaatatt 341  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  50911794 ttcagaagctgcactccagcttctgaacaacagttattgattaatatt 50911747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 50935591 - 50935544
Alignment:
Q  294 ttcaaaagctgcactccagattctgaacaacagttattgattaatatt 341  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  50935591 ttcagaagttgcactccagcttctgaacaacagttattgattaatatt 50935544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 5715386 - 5715325
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 247  Q
    |||||||||||||||||| |||||||||   ||| ||||||| ||| |||||||| ||||||    
T  5715386 gtaacaaactcctctaacaaactaattattctggttaacacgctaaccaaggtttgttacta 5715325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 50935743 - 50935647
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    ||||||||||||||||||||||    |||||||| ||||||| ||| ||| |||| |||||| || |  ||| ||||||||||| || |||||| |||||    
T  50935743 gtaacaaactcctctaactaac----taccttggttaacacgctaaccaa-gtttgttactagactcaacttctgaagacatcataatctgcacatcaga 50935649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 348
Target Start/End: Original strand, 28920312 - 28920473
Alignment:
Q  187 taacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcagaa 286  Q
    ||||||||||||||||  |||||| |||| ||| ||||| | ||| |||| || ||||||| ||  ||||| ||||||||||||||||||||||| ||||    
T  28920312 taacaaactcctctaataaactaactaccctggttaacatgctaaccaagattgattactagactatgcttctgaagacatcagaagctgcactttagaa 28920411  T
Q  287 gctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaatat 348  Q
     |||||||||| |||||||||| |||||||||||||| | ||||||||||||||| ||||||    
T  28920412 actcatgttcagaagctgcacttcagattctgaacaataattattgattaatattccaatat 28920473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 18649486 - 18649575
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgt 121  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  18649486 tgttagaacaattcactatgttctatgcacagcagaagtgcttataaaaaataagttgtttctaagcaagatg-aaataacataaagttgt 18649575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 4315655 - 4315552
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| ||| |||| |||||| || |||||| ||||| |||||||||||||||||||||    
T  4315655 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaacgtttgttactagactctgcttctgaagccatcagaagctgcacttcaga 4315556  T
Q  286 agct 289  Q
    ||||    
T  4315555 agct 4315552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 18641093 - 18641173
Alignment:
Q  267 tcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    ||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||||| |||||    
T  18641093 tcagaagctgcgcttcagaagctcatgttcagaagctacacttcagattctgaacaacaattattgattaatattccaata 18641173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 531568 - 531671
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||  |||||| |||||| | ||||||| ||| ||||||||||||||| || |||||| ||||||||||||||| ||||  |||||    
T  531568 gtaacaaactcctctaaaaaactaactacctttgttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagttgcatatcaga 531667  T
Q  286 agct 289  Q
    ||||    
T  531668 agct 531671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 32813681 - 32813593
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagc 274  Q
    |||||||||||||||||| |||||| |||||| | ||||||| ||| |||||||| |||||| |  |||||| | ||||||||| ||||    
T  32813681 gtaacaaactcctctaacaaactaactaccttcgttaacacgctaaccaaggtttgttactagattctgcttctaaagacatcaaaagc 32813593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 55418476 - 55418408
Alignment:
Q  221 taacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcagaagct 289  Q
    ||||||| ||| ||||||||||||||| || |||||| ||||||||||||||||||  ||| |||||||    
T  55418476 taacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagctgttctttagaagct 55418408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 41925118 - 41925196
Alignment:
Q  33 ttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 112  Q
    |||||||||| | ||||||||||||| |||||||| ||| |||| |||||||||||||||   ||||||||||||||||||    
T  41925118 ttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaaaataagttgtttaagagcaagatgaaaataaca 41925196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 287
Target Start/End: Complemental strand, 29960601 - 29960346
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttcta--agcaagatgaaaataacacaaagttgtaaaaact 128  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||||| ||||||||      |    
T  29960601 tgttagaacaattcactatgttctatgcacagcggaagtgcttatgaaaaataagttatttctaagagcaagatgaaaataacaaaaagttgt------t 29960508  T
Q  129 gaagagagaaaactaatgaatttttattgatcgttgatacttatttacaacaca----tgagta-acaaactcc-------tctaactaactaattacct 216  Q
    | |     |||||||||||||||||||||||||    |||||||||||||||||    |||||| | | ||  |       | |||| |||||| |||||    
T  29960507 gta-----aaaactaatgaatttttattgatcg----tacttatttacaacacataagtgagtatatatacaactagacgttgtaacaaactaactacct 29960417  T
Q  217 tggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcagaag 287  Q
    ||| ||||||| ||| |||||||| |||||| ||||||||| ||||||||||| ||||||| |||||||||    
T  29960416 tggttaacacgctaaccaaggtttgttactagaccctgcttctgaagacatcataagctgcccttcagaag 29960346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 302350 - 302270
Alignment:
Q  267 tcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  302350 tcagaagcagcacttcagaagctcatgttcagaagctgcacttcagattctgaacaacagttattgattcatattccaata 302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 21794528 - 21794631
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| || ||||| |||||| || |||||| ||||||||||||||||||||| |||||    
T  21794528 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccatggtttgttactagactctgcttctgaagacatcagaagctgcacatcaga 21794627  T
Q  286 agct 289  Q
    ||||    
T  21794628 agct 21794631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 45485826 - 45485929
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||| || ||| || ||| || |||||||||||||||||||||||||||    
T  45485826 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttgctagactctgtttctgaagacatcagaagctgcacttcaga 45485925  T
Q  286 agct 289  Q
    ||||    
T  45485926 agct 45485929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 29960336 - 29960258
Alignment:
Q  269 agaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    |||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  29960336 agaagcagcacttcagaagctcatgttcagaagctgcactccaaattctaaacaacagttattgattaatattccaata 29960258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 302473 - 302372
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||| ||| ||||||| ||| |||||||  |||||| || |||||| ||||||||||||||||||||| |||||    
T  302473 gtaacaaactcctctaacaaactaactaccctggttaacacgctaaccaaggttggttactagactctgcttctgaagacatcagaagctgcacatcaga 302374  T
Q  286 ag 287  Q
    ||    
T  302373 ag 302372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 295837 - 295734
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| || | ||| ||||||  |||||||||||  |||||| || |||||| ||||||||||||||||||||| |||||    
T  295837 gtaacaaactcctctaacaaactaactatcctggttaacacactaatcaaggttggttactagactctgcttctgaagacatcagaagctgcacatcaga 295738  T
Q  286 agct 289  Q
    ||||    
T  295737 agct 295734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 39190688 - 39190843
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||| ||||| | ||| ||| |||| |||||| ||   | | |||||||| ||||| |||||||||||||    
T  39190688 gtaacaaactcctctaacaaactaactaccttggttaacatgctaaccaaagtttgttactagacttagatgttgaagacttcagacgctgcacttcaga 39190787  T
Q  286 agctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatatt 341  Q
      || |||| || | ||||||||  ||| ||||| |||||||||||||||||||||    
T  39190788 gtctgatgtccagaggctgcacttaagagtctgagcaacagttattgattaatatt 39190843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 43081675 - 43081778
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    ||||||||||||| |||| |||||| |||||| | ||||| | ||| ||| ||||||||||| || |||||| ||||||||||||||||||||| |||||    
T  43081675 gtaacaaactcctataacaaactaactaccttcgttaacatgctaaccaatgtttattactagactctgcttctgaagacatcagaagctgcacatcaga 43081774  T
Q  286 agct 289  Q
    ||||    
T  43081775 agct 43081778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 18164026 - 18163923
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| ||| | ||||||||| || || ||| | |||||||||||||| ||| ||||||    
T  18164026 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaatggttattactagactctacttctaaagacatcagaagcagcatttcaga 18163927  T
Q  286 agct 289  Q
    ||||    
T  18163926 agct 18163923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 295728 - 295654
Alignment:
Q  267 tcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatatt 341  Q
    ||||| |||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||||||||||    
T  295728 tcagacgctgtacttcagaagctcatgttcagaagctgcacttcaaattctaaacaacagttatcgattaatatt 295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 13273380 - 13273295
Alignment:
Q  200 taactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcagaagct 289  Q
    |||| |||||| |||||||| ||||||| ||| |||||||| |||||| || |||||| ||||||    |||||||||||||||||||||    
T  13273380 taacaaactaactaccttggttaacacgctaaccaaggtttgttactagactctgcttctgaaga----agaagctgcacttcagaagct 13273295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 296000 - 295921
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 112  Q
    |||||||||||| | |||||||||||||||||||||| ||| ||||  ||||||||||||||   ||||||||||||||||||    
T  296000 tgttagaacaat-cgctatgttctatgcacagcggaaagtgcttat--aaaataagttgtttaagagcaagatgaaaataaca 295921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 302636 - 302558
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataa 110  Q
    |||||||||||| | ||||||||||||| |||||||| ||| |||| ||||||||| ||||| | ||||||||||||||||    
T  302636 tgttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaaaataagatgtttatgagcaagatgaaaataa 302558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 44541492 - 44541575
Alignment:
Q  264 acatcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  44541492 acatcagaagcagcacttcagaagctcatgttcagaagctgcacttcagattctgaacaacaattattgattaatattccaata 44541575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 44541400 - 44541453
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtt 239  Q
    |||||||||||||||||| |||||| |||| ||| ||||||  |||||||||||    
T  44541400 gtaacaaactcctctaacaaactaactaccctggttaacacactaatcaaggtt 44541453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 49474 - 49344
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||| ||||||| |||||| |||||||| ||||||| ||| |||||||| |||||| ||||||||| |||||||||||||||| |||| | |||    
T  49474 gtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaaggtttgttactagaccctgcttctgaagacatcagaagcagcacattaga 49375  T
Q  286 ag---ctcatgttcaaaagctgcactccaga 313  Q
    ||   || ||||||| |||||||||| ||||    
T  49374 agtttctgatgttcagaagctgcacttcaga 49344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 49337 - 49262
Alignment:
Q  264 acatcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaata 339  Q
    ||||||||||||  |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  49337 acatcagaagctatacttcagaagctcatgttccgaagctgcacttcagattctgaacaacagttattgattaata 49262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 49628 - 49537
Alignment:
Q  66 aagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgta--aaaactgaagagagaaaactaatgaatttttatt 156  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |   ||||||||||||||||||||||||||||||||||    
T  49628 aagtgcttatgaaaaataagctgtttctaagcaagatgaaa-taacataaagttattgtaaaactgaagagagaaaactaatgaatttttatt 49537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 28249312 - 28249182
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||| ||||||| |||||| |||||||| ||||||| ||| |||||||| |||||| ||||||||| |||||||||||||||| |||| | |||    
T  28249312 gtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaaggtttgttactagaccctgcttctgaagacatcagaagcagcacattaga 28249213  T
Q  286 ag---ctcatgttcaaaagctgcactccaga 313  Q
    ||   || ||||||| |||||||||| ||||    
T  28249212 agtttctgatgttcagaagctgcacttcaga 28249182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 28249175 - 28249100
Alignment:
Q  264 acatcagaagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaata 339  Q
    ||||||||||||  |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  28249175 acatcagaagctatacttcagaagctcatgttccgaagctgcacttcagattctgaacaacagttattgattaata 28249100  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 28249466 - 28249375
Alignment:
Q  66 aagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgta--aaaactgaagagagaaaactaatgaatttttatt 156  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |   ||||||||||||||||||||||||||||||||||    
T  28249466 aagtgcttatgaaaaataagctgtttctaagcaagatgaaa-taacataaagttattgtaaaactgaagagagaaaactaatgaatttttatt 28249375  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 31888586 - 31888483
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||| ||||||| |||||| |||||| | ||||||| ||| |||||||| |||||| ||  ||||| ||||||||||||||||||||||| |||    
T  31888586 gtaacaaacttctctaacaaactaactaccttagttaacacgctaaccaaggtttgttactagactatgcttctgaagacatcagaagctgcactttaga 31888487  T
Q  286 agct 289  Q
    ||||    
T  31888486 agct 31888483  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 7501407 - 7501496
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagct 275  Q
    |||||||||||||||||| |||||| || ||||| ||||||| ||| |||||||| |||||| || |||||| |||||||||||||||||    
T  7501407 gtaacaaactcctctaacaaactaactatcttggttaacacgctaaccaaggtttgttactagactctgcttgtgaagacatcagaagct 7501496  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 9507726 - 9507626
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    ||||||||||||| |||| |||||| |||||||| ||||||| ||| ||||||||||||||| || |||||| ||||||||||||||| || ||||||||    
T  9507726 gtaacaaactcctttaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagttgtacttcaga 9507627  T
Q  286 a 286  Q
    |    
T  9507626 a 9507626  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 34854146 - 34854045
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| || ||| |||||||| ||||||| ||| ||| ||||||||||| || |||||| ||||||||||| ||||||||| |||||    
T  34854146 gtaacaaactcctctaacaaattaactaccttggttaacacgctaaccaaagtttattactagactctgcttctgaagacatcaaaagctgcacatcaga 34854047  T
Q  286 ag 287  Q
    ||    
T  34854046 ag 34854045  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 690036 - 689961
Alignment:
Q  271 aagctgcacttcagaagctcatgttcaaaagctgcactccagattctgaacaacagttattgattaatattgcaata 347  Q
    |||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||    
T  690036 aagcagcacttcagaagctcatgttcgaa-gctgcacttcagattctgaacaacagttattgattaatattccaata 689961  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 32090299 - 32090199
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| ||| |||| ||||||| ||| | |||||| |||||| |  || ||| |||||||||||||||||| ||||||||    
T  32090299 gtaacaaactcctctaacaaactaactacattggttaacacgctaaccgaggtttgttactagattctacttctgaagacatcagaagctgtacttcaga 32090200  T
Q  286 a 286  Q
    |    
T  32090199 a 32090199  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 9503744 - 9503641
Alignment:
Q  186 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaaccctgcttttgaagacatcagaagctgcacttcaga 285  Q
    |||||||||||||||||| |||||| || ||||  ||||||| ||| ||| ||||||||||| || |||||| ||||||| ||||||  || ||||||||    
T  9503744 gtaacaaactcctctaacaaactaactatcttgattaacacgctaaccaaagtttattactagactctgcttctgaagacttcagaaattgtacttcaga 9503645  T
Q  286 agct 289  Q
    ||||    
T  9503644 agct 9503641  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 690282 - 690202
Alignment:
Q  31 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 112  Q
    |||||||||||| | ||||||||||||| |||||||| ||| |||| ||| |||||||||||  ||| |||||||||||||||    
T  690282 tgttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaatataagttgtttaaaagtaagatgaaaataaca 690202  T

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