View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_16 (Length: 413)

Name: NF19563_low_16
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_16
NF19563_low_16
[»] chr5 (2 HSPs)
chr5 (227-413)||(18043253-18043441)
chr5 (163-216)||(18037172-18037225)
[»] chr3 (3 HSPs)
chr3 (212-359)||(33962650-33962797)
chr3 (348-413)||(6847664-6847730)
chr3 (180-300)||(22971527-22971645)
[»] chr7 (2 HSPs)
chr7 (280-413)||(38459989-38460124)
chr7 (181-361)||(38462334-38462518)
[»] chr1 (2 HSPs)
chr1 (197-359)||(1599819-1599981)
chr1 (348-413)||(47805093-47805159)
[»] chr2 (2 HSPs)
chr2 (183-359)||(32225425-32225604)
chr2 (348-413)||(21264521-21264587)
[»] scaffold0043 (1 HSPs)
scaffold0043 (181-359)||(55488-55669)
[»] chr6 (1 HSPs)
chr6 (344-411)||(522493-522561)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 227 - 413
Target Start/End: Original strand, 18043253 - 18043441
Alignment:
Q  227 caatagaggaataggttatatatacatgcaaaaccatatttctaagataaccaaaaaacagagtgattaataataacta-ctatatctcctaaaatatct 325  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  18043253 caatagaggaataggttatatatacatgccaaaccatatttctaatataaccaaaaaacagagtgattaataataaccaactatatctcctaaaatatct 18043352  T
Q  326 cctacaatcttgtaacggacagctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgagtt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||||||||    
T  18043353 cctacaatcttgtaacggacagctcacaccaacacttcccctcaagttggtgcacagagatcttgaatgcccaacttatcaagtgagtt 18043441  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 18037172 - 18037225
Alignment:
Q  163 caggattcttgaggctattgtcaaactgatatacaattatttcttattctttca 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18037172 caggattctcgaggctattgtcaaactgatatacaattatttcttattctttca 18037225  T

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Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 33962797 - 33962650
Alignment:
Q  212 tttcagttaatgttacaatagaggaataggttatatatacatgcaaaaccatatttctaagataaccaaaaaacagagtgattaataataacta-ctata 310  Q
    |||||||  ||||||||  |||||||||||||||||||||||| ||||| |||||||||| ||||||||||| | |||| ||||||||| |||| |||||    
T  33962797 tttcagtacatgttacagaagaggaataggttatatatacatgtaaaacaatatttctaatataaccaaaaa-cggagtaattaataattactaactata 33962699  T
Q  311 tctcctaaaatatctcctacaatcttgtaacggacagctcacaccaaca 359  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33962698 tctcctaaaatatctcctacaatcttgtaaaggacagctcacaccaaca 33962650  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 6847730 - 6847664
Alignment:
Q  348 ctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgagtt 413  Q
    ||||| ||||| || ||||||||||||||||||| ||||    ||||||||||||||||||||||||    
T  6847730 ctcacgccaacgctccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagtt 6847664  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 22971645 - 22971527
Alignment:
Q  180 ttgtcaaactgatatacaattatttcttattctttcagttaatgttacaatagaggaataggttatatatacatgcaaaaccatatttctaagataacca 279  Q
    |||| |||||||||||  ||||||||||||| |||| || ||| ||||||  |||| ||  || ||||||||| | |||||| ||||||||| |||| |     
T  22971645 ttgtgaaactgatataagattatttcttattatttctgtcaatcttacaa-ggaggcatctgtcatatatacacgtaaaaccctatttctaatataa-ct 22971548  T
Q  280 aaaaacagagtgattaataat 300  Q
    ||||| ||||| |||||||||    
T  22971547 aaaaatagagtaattaataat 22971527  T

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Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 280 - 413
Target Start/End: Original strand, 38459989 - 38460124
Alignment:
Q  280 aaaaacagagtgattaataataacta-ctatatctcctaaaatatctcctacaatcttgtaacggacagctcacaccaacacttcccctcaagttggtgc 378  Q
    |||||| |||| ||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  38459989 aaaaacggagtaattaataattactaactatatctccaaaaatatctcctacaatcttgtaaaggacagctcacaccaacactccccctcaagttggtgc 38460088  T
Q  379 aca-agatctccaatgcccaacttgtcaagtgagtt 413  Q
    | | ||||||| ||| ||||||||||||||||||||    
T  38460089 atagagatctcgaatacccaacttgtcaagtgagtt 38460124  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 361
Target Start/End: Original strand, 38462334 - 38462518
Alignment:
Q  181 tgtcaaactgatatacaattatttcttattct---ttcagttaatgttacaatagaggaata-ggttatatatacatgcaaaaccatatttctaagataa 276  Q
    |||||||||||||||  | ||||||| |||||   ||| ||||||||||||  ||| ||||| ||||||||||||||  ||||| |||||||||| ||||    
T  38462334 tgtcaaactgatatatcagtatttctcattctattttcggttaatgttacagaagatgaataaggttatatatacatctaaaacaatatttctaatataa 38462433  T
Q  277 ccaaaaaacagagtgattaataataacta-ctatatctcctaaaatatctcctacaatcttgtaacggacagctcacaccaacact 361  Q
    ||||||| | |||| ||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  38462434 ccaaaaa-cggagtaattaataattactaactatatctccaaaaatatctcctacaatcttgtaaaggacagctcacaccaacact 38462518  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 359
Target Start/End: Original strand, 1599819 - 1599981
Alignment:
Q  197 aattatttcttattct--ttcagttaatgttacaatagaggaataggttatatatacatgcaaaaccatatttctaagataaccaaaaaacagagtgatt 294  Q
    |||||||||| |||||  || |||||||||||||  |||||||||||||||||||||||  |||||||||| |||||  ||| |||||||| |||| |||    
T  1599819 aattatttctcattctattttagttaatgttacagaagaggaataggttatatatacatataaaaccatatctctaa--taaacaaaaaac-gagtaatt 1599915  T
Q  295 aataataacta-ctatatctcctaaaatatctcctacaatcttgtaacggacagctcacaccaaca 359  Q
    |||||| |||| |||||||||||||||||||||||||| |||||||| |||||| || ||||||||    
T  1599916 aataattactaactatatctcctaaaatatctcctacagtcttgtaaaggacagttctcaccaaca 1599981  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 47805159 - 47805093
Alignment:
Q  348 ctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgagtt 413  Q
    ||||| |||||||| ||||||||||||||||||| ||||    ||||||||||||||||||||||||    
T  47805159 ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagtt 47805093  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 183 - 359
Target Start/End: Original strand, 32225425 - 32225604
Alignment:
Q  183 tcaaactgatatacaattatttcttattct--ttcagttaatgttacaatagaggaata-ggttatatatacatgcaaaaccatatttctaagataacca 279  Q
    |||||||||||||  | ||||||| |||||  ||||||||||||||||  ||||||| | ||||||||||||||  ||||| ||||||| || |||||||    
T  32225425 tcaaactgatatatcaatatttctcattctatttcagttaatgttacagaagaggaacaaggttatatatacatctaaaacaatatttcaaatataacca 32225524  T
Q  280 aaaaacagagtgattaataataacta-ctatatctcctaaaatatctcctacaatcttgtaacggacagctcacaccaaca 359  Q
    |||| | |||| ||||||||| |||| |||||||||  |||||||||||||||||| ||||| ||||||||||||||||||    
T  32225525 aaaa-cggagtaattaataattactaactatatctctaaaaatatctcctacaatcgtgtaaaggacagctcacaccaaca 32225604  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 21264587 - 21264521
Alignment:
Q  348 ctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgagtt 413  Q
    ||||| |||||||| ||||||||||||||||||| ||||    ||||||||||||||||||||||||    
T  21264587 ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagtt 21264521  T

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Target: scaffold0043 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 181 - 359
Target Start/End: Complemental strand, 55669 - 55488
Alignment:
Q  181 tgtcaaactgatatacaattatttcttattctttcag--ttaatgttacaatagaggaa-taggttatatatacatgcaaaaccatatttctaagataac 277  Q
    |||||||||||||||| || |||||| ||||||||    | |||||||||  ||||||| |  || ||||||||||| |||||||| ||||||| |||||    
T  55669 tgtcaaactgatataccataatttctcattctttctcgatcaatgttacagaagaggaaatcagtaatatatacatgtaaaaccatgtttctaatataac 55570  T
Q  278 caaaaaacagagtgattaataataacta-ctatatctcctaaaatatctcctacaatcttgtaacggacagctcacaccaaca 359  Q
     ||||||  |||| ||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  55569 -aaaaaagggagtaattaataattactaactatatctcctaaaatatcttctacaatcttgtaaaggacagctcacaccaaca 55488  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 522493 - 522561
Alignment:
Q  344 acagctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgag 411  Q
    |||||||||||||||||| ||||||||||||||||| | | |||   |||||| |||||||||||||||    
T  522493 acagctcacaccaacactccccctcaagttggtgcatagatatcattaatgcctaacttgtcaagtgag 522561  T

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