View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19563_low_17 (Length: 405)
Name: NF19563_low_17
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 34343639 - 34343290
Alignment:
| Q |
10 |
ataattctagctgtggttccagttccaccaccaacatccacaatagaatcaatcccttcaaacacatcactacaatttttcaaagccaaattcaccattt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
34343639 |
ataattctagctgtggttccagttccaccaccaacatccacaatagaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccattt |
34343540 |
T |
|
| Q |
110 |
gagaatcactagccatagcttgattaaacagactcaaatattcaggttttccctcaagaaattcccacacagttgatcctaaagctgcctcatataaagt |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34343539 |
gagaatcactagccatagcctgattaaacagactcaaatattcaggttttccctcaagaaattcccacacagttgatcctaaagctgcctcatataaagt |
34343440 |
T |
|
| Q |
210 |
tggaatttctccacaaatccaatcacccaattgatgaaatttacccatcaaaattggatcagtagacataagaaccattggtgttaaacaatggtctttg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34343439 |
tggaatttctccacaaatccaatcacccaattgatgaaatttacccatcaaaattggatcagtagacataagaaccattggtgttaaacaatggtctttg |
34343340 |
T |
|
| Q |
310 |
caacatgattttgaaaggagttttgatgcaggagtcaaagcatatgcttg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34343339 |
caacatgattttgaaaggagttttgatgcaggagtcaaagcatatgcttg |
34343290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 34331032 - 34330687
Alignment:
| Q |
10 |
ataattctagctgtggttccagttccaccaccaacatccacaatagaatcaatcccttcaaacacatcactacaatttttcaaagccaaattcaccattt |
109 |
Q |
| |
|
|||||| |||| || |||||| ||||||||||||||||||||||||| || ||||| ||||| || ||||||||||||||||||||||| | ||||||| |
|
|
| T |
34331032 |
ataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaaagacctcactacaatttttcaaagccaagcttaccattt |
34330933 |
T |
|
| Q |
110 |
gagaatcactagccatagcttgattaaacagactcaaatattcaggttttccctcaagaaattcccacacagttgatcctaaagctgcctcatataaagt |
209 |
Q |
| |
|
|||||| ||| ||||| |||| ||| || ||||| |||| |||||||| |||| | ||||||||||| |||| |||||| ||| ||||| ||||| | |
|
|
| T |
34330932 |
gagaattacttgccatggcttcattgaagagactactatatgcaggtttttcctccaaaaattcccacaaagttactcctaaggctccctcagataaatt |
34330833 |
T |
|
| Q |
210 |
tggaatttctccacaaatccaatcacccaattgatgaaatttacccatcaaaattggatcagtagacataagaaccattggtgttaaacaatggtctttg |
309 |
Q |
| |
|
||||| ||| ||| |||| |||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34330832 |
tggaacttccccatgaatcaaatcacccaattgatgaaataaactcataaaaattggatcagtacacataagaaccattggtgttaaacaatggtctttg |
34330733 |
T |
|
| Q |
310 |
caacatgattttgaaaggagttttgatgcaggagtcaaagcatatg |
355 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34330732 |
ctgcatgattttgaaaggagctttgatgcaggagtcaaagcatatg |
34330687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 4171867 - 4171970
Alignment:
| Q |
25 |
gttccagttccaccaccaacatccacaatagaatcaatcccttcaaacacatcactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
124 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| | ||| ||||||||| | | |||| |||||| |||||||| | ||||| ||||||||||||| |
|
|
| T |
4171867 |
gttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaattaatcattttggaatcactagcca |
4171966 |
T |
|
| Q |
125 |
tagc |
128 |
Q |
| |
|
|||| |
|
|
| T |
4171967 |
tagc |
4171970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 34951339 - 34951459
Alignment:
| Q |
17 |
tagctgtggttccagttccaccaccaacatccacaatagaatcaatcccttcaaacacatcactacaatttttcaaagccaaattcaccatttgagaatc |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || | ||| ||||||||||||| ||| | |||||| | |||||||||| |||| | |||||||| |
|
|
| T |
34951339 |
tagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttcaaaaacagaattacaatctctcaaagccaacctcacaacatgagaatc |
34951438 |
T |
|
| Q |
117 |
actagccatagcttgattaaa |
137 |
Q |
| |
|
||| ||||||| | |||||| |
|
|
| T |
34951439 |
actttccatagcatcattaaa |
34951459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University