View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_2 (Length: 637)

Name: NF19563_low_2
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_2
NF19563_low_2
[»] chr7 (23 HSPs)
chr7 (225-621)||(6079974-6080365)
chr7 (71-351)||(35315890-35316168)
chr7 (69-262)||(33189923-33190115)
chr7 (69-264)||(25658428-25658622)
chr7 (84-353)||(26073199-26073466)
chr7 (91-360)||(47120-47387)
chr7 (84-353)||(26096986-26097253)
chr7 (69-240)||(36642648-36642819)
chr7 (119-262)||(527553-527694)
chr7 (147-278)||(7511188-7511316)
chr7 (69-171)||(33190107-33190209)
chr7 (71-168)||(47286-47383)
chr7 (69-217)||(32047274-32047422)
chr7 (76-168)||(35315890-35315982)
chr7 (69-168)||(26073372-26073471)
chr7 (69-168)||(26097159-26097258)
chr7 (71-168)||(527461-527558)
chr7 (69-133)||(32056667-32056730)
chr7 (61-119)||(6080057-6080115)
chr7 (481-519)||(18371817-18371855)
chr7 (118-171)||(7511157-7511210)
chr7 (69-126)||(32056863-32056920)
chr7 (69-133)||(5964232-5964296)
[»] chr3 (27 HSPs)
chr3 (69-337)||(46163881-46164146)
chr3 (69-355)||(32808192-32808482)
chr3 (71-347)||(26244901-26245175)
chr3 (71-355)||(12089033-12089316)
chr3 (90-261)||(55214101-55214272)
chr3 (35-347)||(33140328-33140646)
chr3 (71-355)||(43031169-43031446)
chr3 (100-262)||(3157795-3157956)
chr3 (69-337)||(26121992-26122259)
chr3 (71-262)||(45708482-45708674)
chr3 (71-262)||(2051602-2051792)
chr3 (69-168)||(32808189-32808289)
chr3 (69-168)||(2051508-2051607)
chr3 (71-169)||(26244204-26244302)
chr3 (81-168)||(33140329-33140416)
chr3 (71-170)||(43804114-43804213)
chr3 (69-168)||(55214006-55214105)
chr3 (71-168)||(45708669-45708766)
chr3 (69-168)||(46163860-46163958)
chr3 (67-168)||(36012642-36012743)
chr3 (69-128)||(7565632-7565690)
chr3 (71-137)||(43031381-43031447)
chr3 (81-140)||(26245115-26245174)
chr3 (71-168)||(12089032-12089129)
chr3 (323-355)||(2051511-2051543)
chr3 (88-140)||(26122209-26122261)
chr3 (190-262)||(36012575-36012647)
[»] chr4 (28 HSPs)
chr4 (34-262)||(45302458-45302687)
chr4 (69-355)||(51103405-51103689)
chr4 (83-262)||(4892440-4892617)
chr4 (71-262)||(4872589-4872778)
chr4 (86-262)||(35251443-35251619)
chr4 (71-262)||(22886555-22886746)
chr4 (71-262)||(22938219-22938410)
chr4 (71-262)||(43049141-43049332)
chr4 (69-262)||(40681571-40681759)
chr4 (86-247)||(54511373-54511534)
chr4 (91-264)||(34932121-34932292)
chr4 (111-262)||(42077156-42077308)
chr4 (69-161)||(35251621-35251713)
chr4 (71-155)||(39864133-39864217)
chr4 (69-168)||(4892612-4892711)
chr4 (69-168)||(51103593-51103692)
chr4 (71-168)||(54511541-54511638)
chr4 (469-514)||(56338226-56338271)
chr4 (85-168)||(4872773-4872856)
chr4 (71-168)||(43049327-43049421)
chr4 (78-168)||(45302373-45302463)
chr4 (478-514)||(2274396-2274432)
chr4 (73-104)||(35004517-35004548)
chr4 (69-136)||(42077066-42077133)
chr4 (71-168)||(22886460-22886560)
chr4 (71-168)||(22938124-22938224)
chr4 (82-124)||(36825070-36825112)
chr4 (480-516)||(11384487-11384523)
[»] chr8 (23 HSPs)
chr8 (71-343)||(42950397-42950667)
chr8 (73-262)||(41480641-41480830)
chr8 (67-237)||(34153370-34153539)
chr8 (67-337)||(38225494-38225762)
chr8 (71-355)||(42026987-42027269)
chr8 (71-355)||(5074295-5074576)
chr8 (67-262)||(11732728-11732925)
chr8 (69-171)||(38225473-38225575)
chr8 (69-168)||(5074480-5074579)
chr8 (69-156)||(7905674-7905761)
chr8 (81-262)||(23488640-23488820)
chr8 (35-168)||(23488925-23489065)
chr8 (115-262)||(42373289-42373436)
chr8 (69-168)||(23488815-23488913)
chr8 (184-262)||(18385858-18385936)
chr8 (67-168)||(16997132-16997235)
chr8 (71-168)||(42026986-42027083)
chr8 (206-262)||(16997230-16997286)
chr8 (69-168)||(11732634-11732733)
chr8 (69-168)||(42950382-42950481)
chr8 (472-525)||(6133509-6133562)
chr8 (82-171)||(18385779-18385866)
chr8 (480-516)||(42127655-42127691)
[»] chr1 (19 HSPs)
chr1 (63-262)||(4066917-4067113)
chr1 (69-262)||(34535330-34535523)
chr1 (69-355)||(33321076-33321360)
chr1 (73-262)||(49784654-49784847)
chr1 (155-355)||(27133979-27134177)
chr1 (113-262)||(23329431-23329581)
chr1 (134-238)||(38208437-38208541)
chr1 (71-168)||(27134081-27134178)
chr1 (71-171)||(27133862-27133962)
chr1 (71-168)||(33321264-33321361)
chr1 (77-168)||(49784570-49784659)
chr1 (69-168)||(23329337-23329436)
chr1 (69-156)||(34535535-34535622)
chr1 (74-168)||(38208302-38208396)
chr1 (71-161)||(4067115-4067204)
chr1 (69-117)||(2464189-2464237)
chr1 (74-133)||(2464100-2464159)
chr1 (83-128)||(7481190-7481235)
chr1 (215-278)||(38208377-38208438)
[»] chr2 (15 HSPs)
chr2 (69-337)||(36937545-36937809)
chr2 (130-287)||(29469629-29469784)
chr2 (73-262)||(26407536-26407725)
chr2 (69-262)||(29166839-29167032)
chr2 (69-168)||(26407442-26407541)
chr2 (69-168)||(36937731-36937830)
chr2 (69-168)||(29469556-29469657)
chr2 (71-140)||(18143965-18144034)
chr2 (82-162)||(25961135-25961215)
chr2 (203-255)||(25961223-25961275)
chr2 (74-167)||(29166748-29166843)
chr2 (472-525)||(26379647-26379700)
chr2 (69-104)||(30786444-30786479)
chr2 (144-230)||(30786351-30786432)
chr2 (480-516)||(28239640-28239676)
[»] chr6 (14 HSPs)
chr6 (75-262)||(10388265-10388452)
chr6 (69-355)||(67380-67664)
chr6 (72-262)||(30847668-30847858)
chr6 (69-168)||(67568-67667)
chr6 (69-200)||(30122751-30122871)
chr6 (69-200)||(3687665-3687799)
chr6 (82-262)||(16434938-16435114)
chr6 (69-168)||(16434845-16434943)
chr6 (71-168)||(3687821-3687918)
chr6 (189-243)||(30122481-30122535)
chr6 (69-122)||(6714532-6714585)
chr6 (80-128)||(35072422-35072470)
chr6 (69-121)||(10388496-10388548)
chr6 (81-133)||(35072228-35072280)
[»] chr5 (9 HSPs)
chr5 (71-278)||(20730451-20730653)
chr5 (69-259)||(36150869-36151059)
chr5 (85-337)||(13932619-13932866)
chr5 (100-252)||(8999597-8999750)
chr5 (83-168)||(13932788-13932873)
chr5 (69-128)||(17990784-17990843)
chr5 (69-155)||(36150773-36150860)
chr5 (69-123)||(22843783-22843837)
chr5 (83-132)||(22843894-22843943)
[»] scaffold0024 (2 HSPs)
scaffold0024 (69-168)||(70791-70890)
scaffold0024 (69-138)||(70629-70698)
[»] scaffold0081 (1 HSPs)
scaffold0081 (143-243)||(8564-8664)
[»] scaffold0912 (1 HSPs)
scaffold0912 (468-525)||(1854-1908)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 225 - 621
Target Start/End: Original strand, 6079974 - 6080365
Alignment:
Q  225 aatatccaaaagacattgaactattaacactcaaaatatacaaaagaatt-aataaagccagggatcagtttaaaaaatatttgacaaatacattgatta 323  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||  ||||||||| ||||| ||||||||||    
T  6079974 aatatacaaaagacattaaactattaacactcaaaatatacaaaagaatttaataaagtcagggttca-tttggaaaatatttaacaaagacattgatta 6080072  T
Q  324 ttttgagttattaacaaagtcagagaccaattcaatacaaagataagaaccaatttgataatttactcnnnnnnnnnnnttcatcatctttataactaaa 423  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||   ||||||| |||||||| |            ||||||||||| ||| |||||    
T  6080073 ttttgagttattaacagagtcagagaccaatttaatacaaagataaagtccaatttaataatttatt--aaaaaaaaaattcatcatcttcatatctaaa 6080170  T
Q  424 ccaaacattaataaacttcatcactaaactaaaagnnnnnnnntcaaaatattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagtta 523  Q
    | ||||||||||||||||||||||||||  |||||        ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6080171 cgaaacattaataaacttcatcactaaaaaaaaagaaaaa---tcaaaatattatcttcatcatgatacaaaattaacacaaatttaaacccaaaagtta 6080267  T
Q  524 aaaaagaaatgcacatgttgtgaactgtgtgatagtgtttccaacgcttagccccgtcgcccttaccgccaccaagcttctccgatcaccgttgaggt 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080268 aaaaagaaatgcacatgttgtgaactgtgtgatagtgtttccaacgcttagccccgtcgcccttaccgccaccaagcttctccgatcaccgttgaggt 6080365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 71 - 351
Target Start/End: Complemental strand, 35316168 - 35315890
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||||| |||||||||||  | ||||||||||||||||||||||||||    
T  35316168 aaattggtccctgactctattaataactcaaaatggtccctgtctttctcaaacgtttctcagattggtccctaactctattagttgttttgcattttaa 35316069  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaag 270  Q
    | || |||||||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||    | |||||||||||  ||||||||     
T  35316068 gtcattaacgtatcaaataagatccaaaaggcattatgtcattaaccactaaaaaatatccaaaagacattgggtcaataacactcaaa--atacaaaac 35315971  T
Q  271 aattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagacc 351  Q
    || ||||| || |||||| || | | | ||| |||||||||| |||| || |||||||||||||||| | |||||| ||||    
T  35315970 aactaatagagtcagggagcaatctgagaaacatttgacaaagacatagactattttgagttattaatagagtcagggacc 35315890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 69 - 262
Target Start/End: Original strand, 33189923 - 33190115
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||  |||||||||||||||||||||||| | ||||||||| ||||| |||| |||||||||||  ||||||||||||||||||||||||||    
T  33189923 tcaaattggtctttgactctattaataactcaaaatggtatttgtctttatcaaaagtttctcagattggtccctgactctattagttgttttgcatttt 33190022  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    ||| |  ||||||| ||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||||||   ||||||||| ||||||    
T  33190023 aagcctttaacgtaccaaataaga-tcaaaatgtattatgccattaaccactaaataatatccaaaagacattgagacattaacacttaaaata 33190115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 25658428 - 25658622
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||||||||| |||||||||||||||| || |||| |||||||||||||| |||||||| || | |||| |||||||||||||| |||||    
T  25658428 tcaaattggtccctgactctgttaataactcaaaatggtcattgtttttgtcaaacgtttatcagattgctcctcgactttattagttgttttgtatttt 25658527  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatata 264  Q
    ||| |||||| ||| |||||||||| ||||| | ||||||  |||| |||||||||||||| |||||||| |||||  ||||||||||||||||||    
T  25658528 aagccactaaagtaccaaataagatccaaaacacattatgcaattatccactaaataatat-caaaagacgttgaatcattaacactcaaaatata 25658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 84 - 353
Target Start/End: Original strand, 26073199 - 26073466
Alignment:
Q  84 actctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtat 183  Q
    |||||||||||||||||||||| ||  | |||||||||||||||| |||||||||||  || |||||||||||||||||||||||||| || |||||||     
T  26073199 actctattaataactcaaaatggtcactttctttgtcaaacgtttctcagattggtccctgcctctattagttgttttgcattttaagccattaacgtac 26073298  T
Q  184 caaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaagaattaataaagcc 283  Q
    |||||||||| ||||||  |||||  ||| ||||| |||||||||||||||| || |||||    |||||||||||  |||||||| ||||||||||| |    
T  26073299 caaataagatccaaaaggcattattccataaaccagtaaataatatccaaaacacgttgaatcgataacactcaaa--atacaaaacaattaataaaggc 26073396  T
Q  284 agggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaa 353  Q
    || || || | ||| ||| |||||||||| |||  ||  ||||||| ||||||| | |||||| ||||||    
T  26073397 agagaccaatctaagaaacatttgacaaagacagagaccattttgaattattaatagagtcagggaccaa 26073466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 91 - 360
Target Start/End: Original strand, 47120 - 47387
Alignment:
Q  91 taataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataa 190  Q
    |||||| |||||||| | | ||| | |||||||||||| ||| |||||||||  |||||||||||||||||  |||||||| || |||||||||||||||    
T  47120 taataattcaaaatggtttctgtttctgtcaaacgtttctcaaattggtcatcaactctattagttgttttatattttaagtcattaacgtatcaaataa 47219  T
Q  191 gattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaagaattaataaagccagggatc 290  Q
    ||||||||| | ||||| ||||||||||||||||||||| ||||||| ||||| |  ||||||||||||  |||||||| || ||||| |  |||||| |    
T  47220 gattcaaaatacattatatcattaaccactaaataatattcaaaagatattgagccgttaacactcaaa--atacaaaacaactaatagaatcagggacc 47317  T
Q  291 agtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaattcaata 360  Q
    | | | |||||| || |||||| |||  ||| ||||||||||||||| | || || ||||||||| ||||    
T  47318 aatctgaaaaatgttcgacaaagacagagatcattttgagttattaatagagacaaagaccaatttaata 47387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 84 - 353
Target Start/End: Original strand, 26096986 - 26097253
Alignment:
Q  84 actctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtat 183  Q
    |||||||||||||||||||||| ||  | |||||||||||||||| ||| |||||||  || |||||||||||||||||||||||||| || |||||||     
T  26096986 actctattaataactcaaaatggtcactttctttgtcaaacgtttctcaaattggtccctgcctctattagttgttttgcattttaagccattaacgtac 26097085  T
Q  184 caaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaagaattaataaagcc 283  Q
    |||||||||| ||||||  |||||  ||| ||||| |||||||||||||||| || |||||    |||||||||||  |||||||| ||||||||||| |    
T  26097086 caaataagatccaaaaggcattattccataaaccagtaaataatatccaaaacacgttgaatcgataacactcaaa--atacaaaacaattaataaaggc 26097183  T
Q  284 agggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaa 353  Q
    || || || | ||| ||| |||||||||| |||  ||  ||||||| ||||||| | |||||| ||||||    
T  26097184 agagaccaatctaagaaacatttgacaaagacagagaccattttgaattattaatagagtcagggaccaa 26097253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 36642648 - 36642819
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||||| || ||| |||||||||  ||| | |||||||||||||||||||     
T  36642648 tcaaattggtccctgactctattaataactcaacatcatctctgtctttgtcaaaagtgttttagattggtccgtgaatgtattagttgttttgcattta 36642747  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacat 240  Q
    ||| || | || || ||||||| ||  |||| | ||||| ||||||||||||||||||||| ||||||||||    
T  36642748 aagccattgacataccaaataaaatctaaaatacattatatcattaaccactaaataatattcaaaagacat 36642819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 527694 - 527553
Alignment:
Q  119 tcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaacca 218  Q
    |||||||||| |||||||||||  ||||||| ||| |||||||||||||| || || || |||| || |||||||||||||||  |||||||||||||||    
T  527694 tcaaacgtttctcagattggtctctgactct-ttaattgttttgcatttttagccattagcgta-cagataagattcaaaagacgttatgtcattaacca 527597  T
Q  219 ctaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||||||||||| |||| |||||||   ||||||||||||||||    
T  527596 ctaaataatatctaaaaaacattgagtcattaacactcaaaata 527553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 7511316 - 7511188
Alignment:
Q  147 tctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaact 246  Q
    |||||||||| ||||| |||||||| || |||||||| |||||||||| ||||   |||||||||||||| |||||||||||| | ||||||||||||||    
T  7511316 tctattagttattttgtattttaagtcattaacgtataaaataagatttaaaaagcattatgtcattaactactaaataatattc-aaagacattgaact 7511218  T
Q  247 attaacactcaaaatatacaaaagaattaata 278  Q
    ||||||||| |||  |||||||| ||||||||    
T  7511217 attaacacttaaa--atacaaaacaattaata 7511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 33190209 - 33190107
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| ||| ||||||||||||||||||| |||||||| ||| ||||||||| ||| |||| |||||||||||  |||||||||||||||||||| |||||    
T  33190209 tcaatttgatccctgactctattaataattcaaaatggtctctgtctttgttaaatgtttctcagattggtctctgactctattagttgttttgtatttt 33190110  T
Q  169 aag 171  Q
    |||    
T  33190109 aag 33190107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 47383 - 47286
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||  || ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||  ||| |||||||||||||||| |||||    
T  47383 aaattggtctttgtctctattaataactcaaaatgatctctgtctttgtcgaacatttttcagattggtccctgattctattagttgttttgtatttt 47286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 32047274 - 32047422
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||| ||| |||  ||    |||||||||||||||||| |||||    
T  32047274 tcaaattggtctctgactctattaataactcaaaatggtctctgtctttgtcaaacttttctcatattattccccaactctattagttgttttgtatttt 32047373  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaacc 217  Q
    ||| || ||| ||| |||| ||| | ||||||  |||||| ||||||||    
T  32047374 aagccattaaggtaccaaaaaagttccaaaaggcattatgccattaacc 32047422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 35315890 - 35315982
Alignment:
Q  76 ggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||| |||| |||||||| ||  |||||||||||||||||||| |||||    
T  35315890 ggtccctgactctattaataactcaaaatagtctatgtctttgtcaaatgtttctcagattgctccctgactctattagttgttttgtatttt 35315982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 26073471 - 26073372
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| ||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| | |||||||||  || || ||||| |||||||| |||||    
T  26073471 tcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaatgtttcttagattggtctctgcctttattaattgttttgtatttt 26073372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 26097258 - 26097159
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| ||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| | |||||||||  || || ||||| |||||||| |||||    
T  26097258 tcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaatgtttcttagattggtctctgcctttattaattgttttgtatttt 26097159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 527461 - 527558
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||| ||| || ||||||||| |||| ||  ||| ||||||||||||| |||| |||||||||||| ||| | | |||||||||||| |||||    
T  527461 aaattggtctctgtctatattaataattcaagattgtctctgtctttgtcaaatgtttctcagattggtcagtgattttgttagttgttttgtatttt 527558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 32056667 - 32056730
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcag 133  Q
    |||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||| ||||    
T  32056667 tcaatttggtccct-actctattaataacttaaaatggtctttgtctttgtcaaacatttctcag 32056730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 6080115 - 6080057
Alignment:
Q  61 tctttgtatcaaattggtccctgactctattaataactcaaaatgatctttgtctttgt 119  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||| |||  |||||||||    
T  6080115 tctttgtattaaattggtctctgactctgttaataactcaaaataatcaatgtctttgt 6080057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 18371817 - 18371855
Alignment:
Q  481 tcatcatcatacaaaattaacacaaatttaaacccaaaa 519  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  18371817 tcatcatcatccaacattaacacaaatttaaacccaaaa 18371855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 7511157 - 7511210
Alignment:
Q  118 gtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaag 171  Q
    ||||||||||| |||||||||||  | ||||||||| |||||||| ||||||||    
T  7511157 gtcaaacgtttctcagattggtccctaactctattaattgttttgtattttaag 7511210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 32056920 - 32056863
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgt 126  Q
    |||| |||||||| |||| ||||||||||| |||||| | | ||||||||||||||||    
T  32056920 tcaatttggtcccggactttattaataacttaaaatggtttctgtctttgtcaaacgt 32056863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 5964296 - 5964232
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcag 133  Q
    |||| |||||| | |||||| |||||||||||||||| ||  ||||||| |||||||||| ||||    
T  5964296 tcaatttggtctccgactcttttaataactcaaaatggtcactgtctttatcaaacgtttctcag 5964232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 69 - 337
Target Start/End: Complemental strand, 46164146 - 46163881
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||  |||||||||||||||| |||||||||    
T  46164146 tcaaattagtccctgactctattaataactcaaaatggtctctgtctttgtcaaacgtttctcatattggtccctgactctattagttgtattgcatttt 46164047  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaa 268  Q
    ||| || ||||||| |||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||  |||||||    
T  46164046 aagccattaacgtaccaaataagatccaaaagacattatgccattaactactaaataatatccaaaagacattgagccattaacactcaaa--atacaaa 46163949  T
Q  269 agaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaa 337  Q
    | |||||||| || || |||||| | | | ||| |||||||||| |||  ||  |||||||||||||||    
T  46163948 acaattaatagagtca-ggatcaatctgagaaacatttgacaaagacagggaccattttgagttattaa 46163881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 69 - 355
Target Start/End: Complemental strand, 32808482 - 32808192
Alignment:
Q  69 tcaaattggtccctgactctatta--ataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgtt---ttgc 163  Q
    |||||||||||| || ||||||||  ||||||||||||| ||| | |||||||||||||||| |||||||||||  |||||||||||||||||   ||||    
T  32808482 tcaaattggtccttggctctattatgataactcaaaatggtctctatctttgtcaaacgtttctcagattggtccctgactctattagttgttgttttgc 32808383  T
Q  164 attttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatat 263  Q
    |||||||| |  |||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32808382 attttaagcccttaacgtatcaaataagatccaaaagacattatgctattaaccactaaataatatccaaaagacattgaactattaacactcaaaata- 32808284  T
Q  264 acaaaagaattaataaagc-cagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
     ||||| || ||||| ||  ||| || || ||| | ||| |||||||||| |||  ||| ||||||||||||||| | |||||| ||||||||    
T  32808283 -caaaacaactaatagaggtcagagaccaatttgagaaacatttgacaaagacagagatcattttgagttattaatagagtcagggaccaatt 32808192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 71 - 347
Target Start/End: Original strand, 26244901 - 26245175
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||| |||||||||||||||  ||||||| ||| |||||||||||||  ||| |||||||||||| ||||||||||| |||||||| |||||||    
T  26244901 aaattggtccatgactctattaataaaacaaaatggtctctgtctttgtcaaatatttatcagattggtcagtgactctattaattgttttgtattttaa 26245000  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaag 270  Q
    | |||||| ||| |||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||   |||| || |||||  |||| |||     
T  26245001 gtcactaatgtaccaaataagatccaaaaaacattatgtcattaaccactaaataatattcaaaagacattgagtcattaccattcaaa--atacgaaac 26245098  T
Q  271 aattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcaga 347  Q
    ||||| || ||  ||||| || | |||||||  ||| ||||| ||||  || ||||||||||||||| |||||||||    
T  26245099 aattattagagttagggaccaatctaaaaaacctttaacaaagacataaatcattttgagttattaataaagtcaga 26245175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 71 - 355
Target Start/End: Complemental strand, 12089316 - 12089033
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcatt-gactctattagttgtttt-gcatttt 168  Q
    |||||||| | |||||||||||||||||| ||| | ||  | |||||||||||| |||||||||||| ||    |||||||||||||||||| | |||||    
T  12089316 aaattggttcttgactctattaataactctaaagg-tccctctctttgtcaaacatttttcagattgatcccccgactctattagttgtttttgtatttt 12089218  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaa 268  Q
    ||| || |||||||||||||||||||| ||||  |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||  |||||||    
T  12089217 aagtcattaacgtatcaaataagattctaaaggcattatgacattaaccactaaataatatccaaaagacatttaaccattaacactcaaa--atacaaa 12089120  T
Q  269 agaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
    | || ||||| || | ||||  | | |||||||  ||||| ||||||||  |  ||||||| ||||||| |||||||| ||||||||    
T  12089119 acaactaatagagtcggggactaatctaaaaaaattttgataaatacatgaaccattttgaattattaataaagtcagggaccaatt 12089033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 90 - 261
Target Start/End: Complemental strand, 55214272 - 55214101
Alignment:
Q  90 ttaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaata 189  Q
    |||||||||||||||||| | | |||||||||||| ||||| | ||||||| |  |||||||||||||||||| |||| |||  | |||| || ||||||    
T  55214272 ttaataactcaaaatgatttatatctttgtcaaacattttttaaattggtcttcaactctattagttgttttgtatttgaagtgattaacataccaaata 55214173  T
Q  190 agattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaat 261  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  55214172 agattcaaaagacattatgttattaaccactaaataatatccaaaagacattgaatcattaacactcaaaat 55214101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 35 - 347
Target Start/End: Complemental strand, 33140646 - 33140328
Alignment:
Q  35 tgagtaaaccactaaattgatccttgtctttgta--------tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgt 126  Q
    |||||||| |||||||||| ||||||||||||||        |||||||| || ||||||||||||||||||||||||| ||  |||||||||||||| |    
T  33140646 tgagtaaatcactaaattggtccttgtctttgtaccaaatgctcaaattgatctctgactctattaataactcaaaatggtcactgtctttgtcaaacat 33140547  T
Q  127 ttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataa 226  Q
    || |||||||||||   |||||| |||||| ||||| |||||||| || |||| || ||||||||||  |||||  ||||||||||||||   |||||||    
T  33140546 ttctcagattggtccccgactcttttagttattttgtattttaagtcattaacataccaaataagatcaaaaaggcattatgtcattaacggttaaataa 33140447  T
Q  227 tatccaaaagacattgaactattaacactcaaaatatacaaaagaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattt 326  Q
    ||||||||||||||| |   |||||||||||||  |||||||| || ||||||||     || || ||| |||||| ||||||||| |||   || ||||    
T  33140446 tatccaaaagacattaagacattaacactcaaa--atacaaaataactaataaagttgatgaccaatttgaaaaatgtttgacaaagacaaaaatcattt 33140349  T
Q  327 tgagttattaacaaagtcaga 347  Q
    ||||||||||| | |||||||    
T  33140348 tgagttattaatagagtcaga 33140328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 71 - 355
Target Start/End: Original strand, 43031169 - 43031446
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    ||||||||| | |||||||||||||||| |||||| |||||||    ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  43031169 aaattggtcacggactctattaataacttaaaatggtctttgt----gtcaaacatttatcagattggtccttgactctattagttgttttgcattttaa 43031264  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaac----tattaacactcaaaatataca 266  Q
    | || ||| ||||||||||| |||||||||| ||||||  ||||||||||||||||||||  ||||| | ||| |     ||||||| |||||  |||||    
T  43031265 gtcattaaagtatcaaataaaattcaaaagacattatgctattaaccactaaataatatcgcaaagatactgatccattaattaacattcaaa--ataca 43031362  T
Q  267 aaagaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
    ||| ||||||||      ||||||| | ||||||| |||||||||| ||| |||| ||||| ||||||||| | | ||||| |||||||    
T  43031363 aaacaattaata-----cgggatcaatctaaaaaacatttgacaaagacaatgatcattttaagttattaatagaatcagaaaccaatt 43031446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 3157956 - 3157795
Alignment:
Q  100 aaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaa 199  Q
    |||||| ||| |||||||||||||| |||||||||||| |  |  |||||||||||||||||||||| |||| || |||| || |||||||||| |||||    
T  3157956 aaaatggtctctgtctttgtcaaacatttttcagattgattcta-actctattagttgttttgcattataagccattaacataccaaataagatccaaaa 3157858  T
Q  200 gatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    || ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  3157857 gacattatgtcattaatcactaaataatatccaaaaaacattgaaccattaacactcaaaata 3157795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 69 - 337
Target Start/End: Original strand, 26121992 - 26122259
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||| |||||||||||||||| ||||||| | | ||||||||||||| |||| | |||||||||  |||||||||||||||||||| |||||    
T  26121992 tcaaattggtccatgactctattaataacacaaaatggtatctgtctttgtcaaatgtttcttagattggtccatgactctattagttgttttgtatttt 26122091  T
Q  169 aaggcactaacgtatcaaataagattc-aaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaa 267  Q
    ||  || ||| ||| |||||||||| | |||| | | | | |||||||||||||||||||||||||||||||||||   |||| ||||||||  |||| |    
T  26122092 aaatcattaatgtaccaaataagatccaaaaaaacactctctcattaaccactaaataatatccaaaagacattgagtcattaccactcaaa--atacca 26122189  T
Q  268 aagaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaa 337  Q
    || ||||| || ||  ||||| || | |||||||| ||||||||| ||||  || ||||| |||||||||    
T  26122190 aacaattattagagttagggaccaatctaaaaaatgtttgacaaaaacataaatcattttaagttattaa 26122259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 71 - 262
Target Start/End: Original strand, 45708482 - 45708674
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaa-tgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttta 169  Q
    ||||||||| || |||||||||||||||||||| ||||   |||||||||||||||||| |||||||||||   | ||||||||||| ||||| ||||||    
T  45708482 aaattggtctctaactctattaataactcaaaaatgattcatgtctttgtcaaacgtttctcagattggtctccgtctctattagttcttttgtatttta 45708581  T
Q  170 aggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    || ||  |||||| |||||||||| ||||| | |||||||||||||| ||||||||||||| ||||||||||||   ||||||| ||||||||    
T  45708582 agtcatcaacgtaccaaataagatccaaaaaaaattatgtcattaacgactaaataatatctaaaagacattgagtcattaacagtcaaaata 45708674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 71 - 262
Target Start/End: Complemental strand, 2051792 - 2051602
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||| ||||| |||||||||||||||||  ||  ||| ||| |||||| |||| || ||||||     ||||||||| |||||||| |||||||    
T  2051792 aaattggtccatgactttattaataactcaaaatagtccctgtttttatcaaacatttt-catattggtttccaactctattaattgttttgtattttaa 2051694  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    | || ||||||| |||||||||| ||||||| ||||||| || |||||||||||| |||| ||||| |||||||| |||||| |||||||||    
T  2051693 gccattaacgtaccaaataagatccaaaagacattatgttatcaaccactaaatattatctaaaaggcattgaaccattaaccctcaaaata 2051602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 32808189 - 32808289
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattga-ctctattagttgttttgcattt 167  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||  ||| ||||||||||||||||| ||||    
T  32808189 tcaaattggtccctgactctattaataactcaaaatgatctctgtctttgtcaaatgtttctcaaattggtctctgacctctattagttgttttgtattt 32808288  T
Q  168 t 168  Q
    |    
T  32808289 t 32808289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 2051508 - 2051607
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||| |||||||| |||||||||||||||| || || |||||||||||||||| ||| |||||||||||  |||||||||||||||| |||||    
T  2051508 tcaaattggtctctgactctgttaataactcaaaatggtccttatctttgtcaaacgtttctcatattggtcattgtttctattagttgttttgtatttt 2051607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 26244204 - 26244302
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttta 169  Q
    |||||| ||| |||||||||||||||| ||||||| ||| |||||||||| || |||| ||||||||||| ||||||||||||||||||||| ||||||    
T  26244204 aaattgatccatgactctattaataacacaaaatggtctctgtctttgtccaatgtttctcagattggtccttgactctattagttgttttgtatttta 26244302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 33140329 - 33140416
Alignment:
Q  81 ctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||  ||| |||||||| ||||| |||||    
T  33140329 ctgactctattaataactcaaaatgatttttgtctttgtcaaacatttttcaaattggtcatcaactttattagttattttgtatttt 33140416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 43804213 - 43804114
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||| | ||| ||||||||| |||||||| || |||||||||||||| |||| |||||||||||  ||| |||||||||||||||| |||||||    
T  43804213 aaattggtccttaactttattaataattcaaaatggtcattgtctttgtcaaatgtttctcagattggtctctgaatctattagttgttttgtattttaa 43804114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 55214006 - 55214105
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||  |||| |||||||||||||||||||| ||   ||||||||||||||||| ||| |||||||   |||||||||||| ||||||||||||    
T  55214006 tcaaattggtatctgaatctattaataactcaaaatggtcaaggtctttgtcaaacgtttctcaaattggtctccgactctattagtggttttgcatttt 55214105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 45708766 - 45708669
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||| |||||| | ||||||||||||||||  || |||||||||||||||||  ||| |||||||  |||||| ||||||||||||| |||||    
T  45708766 aaattggtcactgactatgttaataactcaaaatggcctctgtctttgtcaaacgttcctcaaattggtctctgactcgattagttgttttgtatttt 45708669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 46163860 - 46163958
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| |||||||  ||||||||||||||||||||||| ||  ||||||||||||| |||| |||||||| ||  ||||||||||| |||||||| |||||    
T  46163860 tcaatttggtccgcgactctattaataactcaaaatggtccctgtctttgtcaaatgtttctcagattgatc-ctgactctattaattgttttgtatttt 46163958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 36012743 - 36012642
Alignment:
Q  67 tatcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatt 166  Q
    |||||||||| || ||||||||||||||||||||||||| ||  ||||||| |||||||||| ||| ||||||   |||   |||||||||||||| |||    
T  36012743 tatcaaattgatctctgactctattaataactcaaaatggtccctgtctttttcaaacgtttctcaaattggttcctgatcttattagttgttttgtatt 36012644  T
Q  167 tt 168  Q
    ||    
T  36012643 tt 36012642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 7565632 - 7565690
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgttt 128  Q
    ||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||    
T  7565632 tcaaattggtccc-gactctattaataactcaaaatgatatctatctttgtcaaacgttt 7565690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 43031447 - 43031381
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattg 137  Q
    ||||||||  |||| ||||||||||||| ||||||||| |||||||||||||| |||||| ||||||    
T  43031447 aaattggtttctgattctattaataacttaaaatgatcattgtctttgtcaaatgttttttagattg 43031381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 26245174 - 26245115
Alignment:
Q  81 ctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtc 140  Q
    |||||| |||||||||||||||||||| | ||||||||| ||| |||||| |||||||||    
T  26245174 ctgactttattaataactcaaaatgatttatgtctttgttaaaggttttttagattggtc 26245115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 12089032 - 12089129
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||||| ||||||||| |||||||| |   ||| ||| |||||  ||||| ||||| |||   ||||||||||||||||||| |||||    
T  12089032 aaattggtccctgactttattaataattcaaaatggttcatgtatttatcaaaatttttttagattagtccccgactctattagttgttttgtatttt 12089129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 2051543 - 2051511
Alignment:
Q  323 attttgagttattaacaaagtcagagaccaatt 355  Q
    ||||||||||||||||| |||||||||||||||    
T  2051543 attttgagttattaacagagtcagagaccaatt 2051511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 26122261 - 26122209
Alignment:
Q  88 tattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtc 140  Q
    ||||||||||| |||||||| | ||| |||||||||| ||||| |||||||||    
T  26122261 tattaataacttaaaatgatttatgtttttgtcaaacattttttagattggtc 26122209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 36012575 - 36012647
Alignment:
Q  190 agattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||| ||||||| ||||||  |||||  |||||||||||| |||||||||||||   ||||| ||||||||||    
T  36012575 agatccaaaagacattatgctattaatgactaaataatattcaaaagacattgagtcattaatactcaaaata 36012647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 7e-60; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 34 - 262
Target Start/End: Complemental strand, 45302687 - 45302458
Alignment:
Q  34 ttgagtaaaccactaaattgatccttgtctttgtatcaaattggt-ccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttca 132  Q
    |||||||||||||||||||| | | ||||||||||| |||||  | |||||||| ||||||||| |||||||| | | |||||||||||||| |||||||    
T  45302687 ttgagtaaaccactaaattggttcatgtctttgtattaaattctttccctgactttattaataattcaaaatggtttctgtctttgtcaaacatttttca 45302588  T
Q  133 gattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatcca 232  Q
     |||||||  ||||||||||||||||||||||||||||| || |||| |||||||||||||||||||   |||||| ||||||||||| |||||||||||    
T  45302587 tattggtccctgactctattagttgttttgcattttaagtcattaacatatcaaataagattcaaaatgcattatgacattaaccactgaataatatcca 45302488  T
Q  233 aaagacattgaactattaacactcaaaata 262  Q
    ||||||| || ||||||||| |||||||||    
T  45302487 aaagacactggactattaacgctcaaaata 45302458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 69 - 355
Target Start/End: Original strand, 51103405 - 51103689
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||||||||||||||||| |||||||| || ||| |||||||||| |||| || |||||||| |  |||||||||||| ||||| |||||    
T  51103405 tcaaattggtccctgactctattaataattcaaaatggtcattgcctttgtcaaaagtttctcggattggtcttcaactctattagttcttttgtatttt 51103504  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaa 268  Q
    ||| || || |||| |||||||||  ||||||  ||||| || | |||||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  51103505 aagtcattagcgtaccaaataagacccaaaaggcattatatcctcaaccactaaataatatccaaaagacattgaaccattaacactcaaa--atacaaa 51103602  T
Q  269 agaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
    | || ||||| |  || | | || ||| | |||| ||||| ||| |||  || |||||||||||||||| | |||||| ||||||||    
T  51103603 acaactaatagaatcatgaaccaatttgagaaatgtttgataaagacagagactattttgagttattaatagagtcagtgaccaatt 51103689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 83 - 262
Target Start/End: Original strand, 4892440 - 4892617
Alignment:
Q  83 gactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgta 182  Q
    ||||||||||||||||||||||| |   |||||||||||||| ||| | |||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  4892440 gactctattaataactcaaaatggttactgtctttgtcaaacatttcttagattggtccctgactctattagttgttttgcattttaagccactaacgta 4892539  T
Q  183 tcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
     |||||||||| ||||| | ||  || |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  4892540 ccaaataagatccaaaaaacat--tgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaata 4892617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 71 - 262
Target Start/End: Original strand, 4872589 - 4872778
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||| || || |||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||  ||||||||||||||||||||||| ||||    
T  4872589 aaattgatctctaactctattaataactcaaaatgatctctgtctttgtcaaacgtttct-agattgatccctgactctattagttgttttgcatattaa 4872687  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    | || |||||||  ||||||||||||||||| ||| || ||||| |||||||||||||| ||||||||||||| | |||||||| |||||||    
T  4872688 gtcattaacgtactaaataagattcaaaagacatt-tgccattagccactaaataatatacaaaagacattgagccattaacacccaaaata 4872778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 35251443 - 35251619
Alignment:
Q  86 tctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatca 185  Q
    |||||||||||||||||||| | | |||||||||||||  ||||| |||||| ||  |||| ||||||||| |||||||||||||| || |||  || ||    
T  35251443 tctattaataactcaaaatggtttatgtctttgtcaaatattttttagattgatctctgacgctattagttattttgcattttaagtcattaagatacca 35251542  T
Q  186 aataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  35251543 aataagatccaaaagacattacgtcattaaccactaaataatatccaaaagacattgagttattaacactcaaaata 35251619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 71 - 262
Target Start/End: Complemental strand, 22886746 - 22886555
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||  ||||||||||||||| |||||||  | | | |||||||||||||||||| ||||||||| | |||||||||| |||||||| |||||||    
T  22886746 aaattggtctttgactctattaataattcaaaatagtttctatctttgtcaaacgttttttagattggtcttcgactctattacttgttttgtattttaa 22886647  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    | || ||||||| |||||||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||||| | || |||||| ||||||    
T  22886646 gtcattaacgtaacaaataagatccaaaacacattatatcattaaccactaaataatattcaaaagacattgagccatgaacactaaaaata 22886555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 71 - 262
Target Start/End: Complemental strand, 22938410 - 22938219
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||  ||||||||||||||| |||||||  | | | |||||||||||||||||| ||||||||| | |||||||||| |||||||| |||||||    
T  22938410 aaattggtctttgactctattaataattcaaaatagtttctatctttgtcaaacgttttttagattggtcttcgactctattacttgttttgtattttaa 22938311  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    | || ||||||| |||||||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||||| | || |||||| ||||||    
T  22938310 gtcattaacgtaacaaataagatccaaaacacattatatcattaaccactaaataatattcaaaagacattgagccatgaacactaaaaata 22938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 71 - 262
Target Start/End: Original strand, 43049141 - 43049332
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||  ||| |||||||||||||||||||| ||  | |||||||||| | ||||||| ||||||    |||||||||| |||||||| |||||||    
T  43049141 aaattggtcggtgagtctattaataactcaaaatggtccctatctttgtcaagcttttttcaaattggtgcccgactctattaattgttttgtattttaa 43049240  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    | || ||| ||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  43049241 gtcattaatgtatcaaataagatctaaaaggcattatgtcattaaccactaaataatatccaaaagacattgaactattaacattaaaaata 43049332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 40681759 - 40681571
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||||| ||||||||||||| |||||| ||     ||||||| ||||||||| | |||||||   |||| |||||||| ||||| |||||    
T  40681759 tcaaattggtccctgattctattaataacttaaaatggtc-----ctttgtcgaacgttttttaaattggtccccgactgtattagttattttgtatttt 40681665  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    ||| || ||| ||||||| |||||||||||||| ||||||||| | |||| ||||||||||||| |||||||||| ||||||||||||||||||    
T  40681664 aagtcattaatgtatcaattaagattcaaaagacattatgtcactgaccattaaataatatccataagacattgagctattaacactcaaaata 40681571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 54511373 - 54511534
Alignment:
Q  86 tctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatca 185  Q
    |||||||||||||||||||  ||||| ||||||||||  |||||| |||||||||   ||||||||||||| ||||| |||||||  || ||||||||||    
T  54511373 tctattaataactcaaaatagtctttatctttgtcaattgttttttagattggtctccgactctattagttcttttgtattttaaatcattaacgtatca 54511472  T
Q  186 aataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaacta 247  Q
     ||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  54511473 gataagatccaaaagatattatatcattaacgactaaataatatccaaaagacgttgaacta 54511534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 91 - 264
Target Start/End: Original strand, 34932121 - 34932292
Alignment:
Q  91 taataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataa 190  Q
    ||||||||||||||| | |  |||||||||||| |||| ||| |||||||    |||||||||||| ||||| |||||||  || ||| |||||||||||    
T  34932121 taataactcaaaatggtgt--gtctttgtcaaatgtttatcatattggtctcaaactctattagttcttttgtattttaactcattaatgtatcaaataa 34932218  T
Q  191 gattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatata 264  Q
    ||| ||||||  ||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  34932219 gatccaaaaggcattatatcattaaccactaaataatattcaaaagacattgagccattaacactcaaaatata 34932292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 111 - 262
Target Start/End: Complemental strand, 42077308 - 42077156
Alignment:
Q  111 tgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt-aaggcactaacgtatcaaataagattcaaaagatattatgt 209  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| || ||| |||  |||||||||  ||||   ||||||     
T  42077308 tgtctttgtcaaacgtttttcagattggtcatcgactctattagttgttttgtattttgaagtcattaatgtactaaataagatcgaaaatgcattatgc 42077209  T
Q  210 cattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
     ||||| ||||||||||||| ||||| ||||||| | |||| |||||||||||    
T  42077208 tattaatcactaaataatattcaaaaaacattgagccattatcactcaaaata 42077156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 35251713 - 35251621
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgtttt 161  Q
    |||| ||||||||| ||||||||||||||| | |||| ||||||||||| ||||| |||| |||||||||||  |||||||||||||||||||    
T  35251713 tcaatttggtccctaactctattaataacttataatggtctttgtctttctcaaatgtttctcagattggtctctgactctattagttgtttt 35251621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 39864133 - 39864217
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagt 155  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||| ||| |||||||  || ||||||||||    
T  39864133 aaattggtccccgactctattaataactcaaaatgatccctgtctttgtcaaacttttctcatattggtctctgtctctattagt 39864217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 4892711 - 4892612
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| |||||||| ||||||||| | || |||||||| ||||||||||||| ||| |||| |||||||||||   ||||||||||||||||||| |||||    
T  4892711 tcaatttggtcccagactctatttacaattcaaaatggtctttgtctttgtgaaatgtttctcagattggtccacgactctattagttgttttgtatttt 4892612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 51103692 - 51103593
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||| ||||||||||||||||||||||||  ||| ||||||| |||||| ||| ||| ||||||   ||| |||||||||||||||| |||||    
T  51103692 tcaaattggtcactgactctattaataactcaaaatagtctctgtctttatcaaacatttctcaaattggttcatgattctattagttgttttgtatttt 51103593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 54511638 - 54511541
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||  || ||||||||||| |||||||| ||| | |||| ||||||||||||| | |||||||  |||||||||||| ||||||| |||||    
T  54511638 aaattggtccacgaatctattaataattcaaaatggtctatatcttagtcaaacgttttttaaattggtccctgactctattagctgttttgtatttt 54511541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 56338271 - 56338226
Alignment:
Q  469 aaaatattatcttcatcatcatacaaaattaacacaaatttaaacc 514  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  56338271 aaaatattatcttcatcatcatataaaattaacacaaatttaaacc 56338226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 4872856 - 4872773
Alignment:
Q  85 ctctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||| |||||||||| ||||||| | ||  |||| ||| |||||||  |||||||||||||||||||| |||||    
T  4872856 ctctattaataacttaaaatgatctctgtctttatgaagtgtttctcatattggtctctgactctattagttgttttgtatttt 4872773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 43049421 - 43049327
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||| || |||| ||||||||||| |||||||| |   ||| |||||||||||||| |||||||| ||  |||||||||||||||||||| |||||    
T  43049421 aaattgatctctgagtctattaataattcaaaatggt---tgtttttgtcaaacgtttctcagattgatctctgactctattagttgttttgtatttt 43049327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 45302373 - 45302463
Alignment:
Q  78 tccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||| |||||| |||||||  ||  ||||||||| ||| |||| ||| |||||||  | |||||||||||||||||| |||||    
T  45302373 tccctgactctactaataattcaaaatattcactgtctttgtgaaatgtttctcaaattggtctctaactctattagttgttttgtatttt 45302463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 514
Target Start/End: Original strand, 2274396 - 2274432
Alignment:
Q  478 tcttcatcatcatacaaaattaacacaaatttaaacc 514  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2274396 tcttcatcatcatccaaaattaacacaaatttaaacc 2274432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 35004517 - 35004548
Alignment:
Q  73 attggtccctgactctattaataactcaaaat 104  Q
    ||||||||||||||||||||||||||||||||    
T  35004517 attggtccctgactctattaataactcaaaat 35004548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 42077066 - 42077133
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagatt 136  Q
    |||||||||||| ||||| ||||||||||||||| |||| | | ||||||||| | |||||| |||||    
T  42077066 tcaaattggtccttgactttattaataactcaaattgatgtatatctttgtcagaagttttttagatt 42077133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 22886460 - 22886560
Alignment:
Q  71 aaattggtccctgactctattaat---aactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattt 167  Q
    |||||||| ||||||| |||||||   ||||||||||  |  |||||||||||||| |||| ||||||| |||  | | |||||||||||||||| ||||    
T  22886460 aaattggttcctgactttattaataataactcaaaatagtacttgtctttgtcaaatgtttctcagattagtctctaattctattagttgttttgtattt 22886559  T
Q  168 t 168  Q
    |    
T  22886560 t 22886560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 22938124 - 22938224
Alignment:
Q  71 aaattggtccctgactctattaat---aactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattt 167  Q
    |||||||| ||||||| |||||||   ||||||||||  |  |||||||||||||| |||| ||||||| |||  | | |||||||||||||||| ||||    
T  22938124 aaattggttcctgactttattaataataactcaaaatagtacttgtctttgtcaaatgtttctcagattagtctctaattctattagttgttttgtattt 22938223  T
Q  168 t 168  Q
    |    
T  22938224 t 22938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 36825112 - 36825070
Alignment:
Q  82 tgactctattaataactcaaaatgatctttgtctttgtcaaac 124  Q
    |||||||||||||||||||||||||||| | ||||| ||||||    
T  36825112 tgactctattaataactcaaaatgatctatatctttatcaaac 36825070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 516
Target Start/End: Original strand, 11384487 - 11384523
Alignment:
Q  480 ttcatcatcatacaaaattaacacaaatttaaaccca 516  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  11384487 ttcatcatcatccaaaattaaaacaaatttaaaccca 11384523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 71 - 343
Target Start/End: Complemental strand, 42950667 - 42950397
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||| |||| ||||||||||||||||||||||||| || ||||||||||||||| ||| ||| |||| ||  ||||||||||||||||||| ||||||||    
T  42950667 aaataggtctctgactctattaataactcaaaatggtcattgtctttgtcaaacatttctcatattgatctctgactctattagttgttttacattttaa 42950568  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaag 270  Q
    |  | |||||||||||||||||| ||||||| ||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||  ||||||||     
T  42950567 gttattaacgtatcaaataagatccaaaagacattatgttattagccactaaataatattcaaaagacattgaaccattaacactcaaa--atacaaaac 42950470  T
Q  271 aattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagt 343  Q
    |||||| | ||  ||||| || | | | ||| |||||||||   ||| ||| ||||||||||||||| |||||    
T  42950469 aattaacagagttagggaccaatctgagaaacatttgacaacggcatagatcattttgagttattaataaagt 42950397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 41480830 - 41480641
Alignment:
Q  73 attggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaagg 172  Q
    |||| ||||||||| |||||||||||||||||| |   |||||||||||||| ||||||| |||| || ||||||||||||||||||||| ||||||||     
T  41480830 attgttccctgactttattaataactcaaaatggttactgtctttgtcaaacatttttcatattgatccttgactctattagttgttttgtattttaagt 41480731  T
Q  173 cactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    || ||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||   ||||||||||||||||    
T  41480730 cattaacgtaccaaataagattcgaaagatattatgccattaaccactaaataatattcaaaagacattgagtcattaacactcaaaata 41480641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 34153539 - 34153370
Alignment:
Q  67 tatcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatt 166  Q
    |||||||||||||  |||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||  |||||||||||| ||||||||||||    
T  34153539 tatcaaattggtctatgactctattaataactcaaaatgat-tatgtctttgtcaaacgtttctcaaattggttcttgactctattaattgttttgcatt 34153441  T
Q  167 ttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaaga 237  Q
    ||||| || ||| |||||||||||||| |||||   |||||| ||||||||||||||||||||||||||||    
T  34153440 ttaagccattaatgtatcaaataagatccaaaatgcattatgccattaaccactaaataatatccaaaaga 34153370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 67 - 337
Target Start/End: Complemental strand, 38225762 - 38225494
Alignment:
Q  67 tatcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatt 166  Q
    |||||||||||||||||||||||||||||| | |||||| |   |||||||||||||| ||  ||| |||||||  ||||||||||| ||||||||||||    
T  38225762 tatcaaattggtccctgactctattaataatttaaaatggttcatgtctttgtcaaacattcctcatattggtccctgactctattatttgttttgcatt 38225663  T
Q  167 ttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatataca 266  Q
    ||||| || | ||| | |||||| ||| |||||| ||||||||||||||| ||| |||||||||||||||||||||| | ||||||||| |||||   ||    
T  38225662 ttaagtcattgacgcaccaaataggatccaaaaggtattatgtcattaacaactgaataatatccaaaagacattgagccattaacacttaaaatg--ca 38225565  T
Q  267 aaagaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaa 337  Q
    ||| || ||||| || ||| || || | | |||||||||||||||||||   ||  |||||||||||||||    
T  38225564 aaacaactaatagagtcagagaccaatctgaaaaatatttgacaaataccaagaccattttgagttattaa 38225494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 71 - 355
Target Start/End: Complemental strand, 42027269 - 42026987
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    ||||||||| |||||||||||||||||| |||||| |  ||||||||||||||  ||| ||| |||| ||    ||||||||| ||| |||  |||||||    
T  42027269 aaattggtctctgactctattaataacttaaaatggttcttgtctttgtcaaatctttctcaaattgatccccaactctattaattgatttatattttaa 42027170  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaag 270  Q
    | || ||| |||||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||   ||||| |||||||  ||||||||     
T  42027169 gtcattaatgtatcaaataagatccaaaaggcattatgtcataaaccactaaataatatccaaaagacattgagtcattaaaactcaaa--atacaaaac 42027072  T
Q  271 aattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
    |||||||| || || |||||| ||| | |||  ||||||||| ||    |  ||||||||||||||| |||||| | ||||||||    
T  42027071 aattaatagagtcacggatcaatttgagaaaggtttgacaaagacgaaaaacattttgagttattaataaagtcggggaccaatt 42026987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 355
Target Start/End: Original strand, 5074295 - 5074576
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||| | ||||||| ||||||||||||| |||| ||||||||||||| |||| ||| |||| ||   || | |||||| ||||||| |||||||    
T  5074295 aaattggtcc-taactctatgaataactcaaaataatctctgtctttgtcaaatgtttctcaaattgatccccgattttattagctgttttgtattttaa 5074393  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaag 270  Q
      || ||||||| |||||| |||  | |||  |||||| |||||||||| |||||||||||||||||||||||   |||||||||||||  ||||||||     
T  5074394 accattaacgtaccaaatatgatcgagaaggcattatgccattaaccaccaaataatatccaaaagacattgagtcattaacactcaaa--atacaaaac 5074491  T
Q  271 aattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
    || ||||| || |||| | || | | ||||| |||||||||| |||  ||  ||||||||||||||| | || ||| ||||||||    
T  5074492 aactaatagagtcaggaaccaatctgaaaaacatttgacaaagacagggaccattttgagttattaatagagacagggaccaatt 5074576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 67 - 262
Target Start/End: Complemental strand, 11732925 - 11732728
Alignment:
Q  67 tatcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttg--ca 164  Q
    ||||| ||| ||||||||||||| |||||||||||||||  | |||||||| ||||  |||| ||| |||||||  ||||||||||| || ||||   ||    
T  11732925 tatcatattagtccctgactctagtaataactcaaaatggccattgtctttatcaagtgtttctcaaattggtccctgactctattaatttttttttaca 11732826  T
Q  165 ttttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    ||||||| || ||||||| |||||||||| |||||   |||||| |||||||||||||||||||| |||| || |||||   ||||||||||||||||    
T  11732825 ttttaagccattaacgtaccaaataagatccaaaatgcattatgccattaaccactaaataatattcaaatgatattgagtcattaacactcaaaata 11732728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 38225473 - 38225575
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| ||||||||| |||||||||||||||||||||| |||| || |||||||||  |||||||||||||||  ||||||||||||||||||||||||||    
T  38225473 tcaatttggtcccttactctattaataactcaaaatggtcttggtatttgtcaaatatttttcagattggtctctgactctattagttgttttgcatttt 38225572  T
Q  169 aag 171  Q
    |||    
T  38225573 aag 38225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 5074579 - 5074480
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||   |||||||||||||||||||| |||||    
T  5074579 tcaaattggtccctgtctctattaataactcaaaatggtccctgtctttgtcaaatgtttttcagattggttcctgactctattagttgttttgtatttt 5074480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 7905674 - 7905761
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagtt 156  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  || |||||||||||    
T  7905674 tcaaattagtccctgactctattaataactcaaaatgatctctgtctttatcaaacgtttttcagattggtccctggctctattagtt 7905761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 23488640 - 23488820
Alignment:
Q  81 ctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacg 180  Q
    |||| ||||| |||||||||||||| |   || |||||||||| |||| | |||||| |  |  ||||| |||||||||||| |||| ||| || |||||    
T  23488640 ctgattctatgaataactcaaaatggttcctgactttgtcaaatgtttcttagattgattctatactctcttagttgttttgtattt-aagtcattaacg 23488738  T
Q  181 tatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||||||||||||  ||||   ||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||    
T  23488739 tatcaaataagatctaaaaaccattatgtcactaaccactaaataatatccaaaagacattgagtcattaacactcaaaata 23488820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 23489065 - 23488925
Alignment:
Q  35 tgagtaaaccactaaattgatccttgtctttgta--------tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgt 126  Q
    |||||||| ||| |||||||||||||||||||||        |||||||||||| ||||||||| |||||||||||||| || |||||||||||||| ||    
T  23489065 tgagtaaatcaccaaattgatccttgtctttgtaccaaattctcaaattggtccatgactctatgaataactcaaaatggtcattgtctttgtcaaatgt 23488966  T
Q  127 ttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    || ||| ||||||| ||||||||||||| ||||||| |||||    
T  23488965 ttctcaaattggtccttgactctattag-tgttttgtatttt 23488925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 42373289 - 42373436
Alignment:
Q  115 tttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcatta 214  Q
    |||||||||||||| ||| |||||||  ||||| ||||| |||||||| |||||||| || |||| |||||||||| || ||||||| |||||  ||| |    
T  42373289 tttgtcaaacgtttctcacattggtccctgactttattaattgttttgtattttaagtcattaacatatcaaataacatccaaaagacattattccatga 42373388  T
Q  215 accactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||| ||||||||||  |||| | ||||||| ||||||||||||||||    
T  42373389 accattaaataatatttaaaaaatattgaaccattaacactcaaaata 42373436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 23488913 - 23488815
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||  ||| ||||||||||| ||||||||||||| ||||||| |||||    
T  23488913 tcaaattggtccctgactctatgaataattcaaaatggtctctgtctttgtcaaatatttctcagattggtccttgactctattag-tgttttgtatttt 23488815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 18385936 - 18385858
Alignment:
Q  184 caaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||   ||||||||| ||||||    
T  18385936 caaataagattcaaaagacattatgtcattaaccactaaataatattcaaaagatattgagtcattaacacttaaaata 18385858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 16997132 - 16997235
Alignment:
Q  67 tatcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtc--attgactctattagttgttttgca 164  Q
    |||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||| |||  ||||||    |||||||||||||||||||| |    
T  16997132 tatcaatttggttcctaactctattaataactcaaaatggtctttgtctttgtcaaatgtttctcatgttggtccacatgactctattagttgttttgta 16997231  T
Q  165 tttt 168  Q
    ||||    
T  16997232 tttt 16997235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 42026986 - 42027083
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||| |||| |||||||||||||||||| | || ||||||||||||| ||| ||| |||| ||  ||||||||||| |||||||| |||||    
T  42026986 aaattggtccccgactttattaataactcaaaatgtttttcgtctttgtcaaacctttctcaaattgatccgtgactctattaattgttttgtatttt 42027083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 16997286 - 16997230
Alignment:
Q  206 atgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  16997286 atgtcattaaccactaaataatattcaaaagacattgaaccattaaaactcaaaata 16997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 11732634 - 11732733
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| |||||| |||||||||||||||| |||||||| ||| |||| |||| ||  |||| | ||||||||| ||||||||||| ||||||||| |||||    
T  11732634 tcaatttggtcactgactctattaataattcaaaatggtctctgtcattgtgaagtgtttcttagattggtctttgactctatttgttgttttgtatttt 11732733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 42950382 - 42950481
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| ||| ||||| ||| |||||||||||||||||||||| || | |||||||| |||| |||||||||||  | ||||| ||| |||||||| |||||    
T  42950382 tcaatttgatccctaactttattaataactcaaaatgatctatgccgttgtcaaatgtttctcagattggtccctaactctgttaattgttttgtatttt 42950481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 6133562 - 6133509
Alignment:
Q  472 atattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagttaaa 525  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||| |||||    
T  6133562 atattatcttcatcatcatccaaaattaactcaaatataaacccaaaacttaaa 6133509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 18385779 - 18385866
Alignment:
Q  82 tgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaag 171  Q
    |||||||||||||||||||||||  | | |||||||||||||| ||| |||||||||||    |||| |||| |||||||| ||||||||    
T  18385779 tgactctattaataactcaaaat--tgtctgtctttgtcaaacatttatcagattggtccccaactccattaattgttttgtattttaag 18385866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 516
Target Start/End: Original strand, 42127655 - 42127691
Alignment:
Q  480 ttcatcatcatacaaaattaacacaaatttaaaccca 516  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  42127655 ttcatcatcatccaaaattaaaacaaatttaaaccca 42127691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 63 - 262
Target Start/End: Original strand, 4066917 - 4067113
Alignment:
Q  63 tttgtatcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttg 162  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||  ||||||||||||| |||| ||||||||||||| |||||||| |   ||||||    
T  4066917 tttgtatcaaattggtccctgactctattaataattcaaaatggtcactgtctttgtcaaaagtttctcagattggtcatcgactctataa---gttttg 4067013  T
Q  163 cattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
     |||||||| || ||||||| |||||||||| ||||||| ||||||||||| || || ||||||||||||||||||||||| | ||||||||||||||||    
T  4067014 tattttaagtcattaacgtaccaaataagatccaaaagacattatgtcatttactacgaaataatatccaaaagacattgagccattaacactcaaaata 4067113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 69 - 262
Target Start/End: Original strand, 34535330 - 34535523
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||| |||| ||||||||||||||||| |||||| ||  ||  |||||||||||||| ||| |||||||  ||||| |||||||| |||||||||||    
T  34535330 tcaaattagtccttgactctattaataacttaaaatggtcactgaatttgtcaaacgtttctcaaattggtccctgactgtattagttattttgcatttt 34535429  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    ||  || ||||||| ||||||||||||||||  ||| || ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  34535430 aaatcattaacgtaccaaataagattcaaaaagtatcatatcattaaccactaaataatattcaaaagacattgagccattaacactcaaaata 34535523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 69 - 355
Target Start/End: Original strand, 33321076 - 33321360
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||  ||||||||||||||| | |||||||||| |||||||||||||| ||| | | |||| ||   ||||||||||||||||||| |||||    
T  33321076 tcaaattggtcattgactctattaataatttaaaatgatctctgtctttgtcaaacatttcttatattgatccccgactctattagttgttttgtatttt 33321175  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaa 268  Q
    ||| || ||||||| ||||||| |||||||||  || ||||||||||| | |||||||||||||||||||| |||   |||| ||||||||  |||||||    
T  33321176 aagtcattaacgtaccaaataaaattcaaaaggcatcatgtcattaacgattaaataatatccaaaagacaatgagtcattatcactcaaa--atacaaa 33321273  T
Q  269 agaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
    | || ||||| || ||  || || ||| |||||  ||||||||| || | || |||||||||||||||| | ||||||| |||||||    
T  33321274 acaaataatagagacaatgaccaatttgaaaaaagtttgacaaagacgtggactattttgagttattaatagagtcagaaaccaatt 33321360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 49784847 - 49784654
Alignment:
Q  73 attggtccctgactctattaataactcaaaatgatctttgtctttgt---caaacgtttttcagattggtcattgactctattagttgttttg-catttt 168  Q
    |||||||||||||||||||||||||||||||| | |  ||| ||| |   |||| |||| |||||||||||  |||||||||||||| ||||  ||||||    
T  49784847 attggtccctgactctattaataactcaaaattagccatgttttttttatcaaatgtttctcagattggtctctgactctattagttttttttacatttt 49784748  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    ||| || |||||||   |||||||||||||||| |||||| |||||||||||| ||||||| ||||| ||||||||| || |||||||||||||    
T  49784747 aagtcattaacgtacttaataagattcaaaagacattatgccattaaccactacataatattcaaaacacattgaaccatcaacactcaaaata 49784654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 155 - 355
Target Start/End: Original strand, 27133979 - 27134177
Alignment:
Q  155 ttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacac 254  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||   ||||||||    
T  27133979 ttgttttgcattttaagtcattaacgtaccaaataagatccaaaagacattatgccattaaccactaaataatatccaaaatacattgagtcattaacac 27134078  T
Q  255 tcaaaatatacaaaagaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaat 354  Q
    |||||  |||||||| || ||||| || ||| || || | | | ||| |||||||||| ||||  |  ||||||||||||||| | ||||| ||||||||    
T  27134079 tcaaa--atacaaaacaactaatagagtcagagaccaatctgagaaacatttgacaaagacatgaaccattttgagttattaatagagtcaaagaccaat 27134176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 23329581 - 23329431
Alignment:
Q  113 tctttgtcaaacgtttttcagattggtcattgactctattagttg-ttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtca 211  Q
    ||||| |||||  ||||| |||||||||   |||||||||||||  ||||| |||||||  || ||| ||| |||||||||| ||||||  |||||||||    
T  23329581 tctttatcaaatattttttagattggtctccgactctattagtttcttttgtattttaaatcattaatgtaccaaataagatccaaaaggcattatgtca 23329482  T
Q  212 ttaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    |||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  23329481 ttaaccactaaataatattctaaagacattgaactattaacactaaaaata 23329431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 38208541 - 38208437
Alignment:
Q  134 attggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaa 233  Q
    |||||||  ||||||||||||||||| ||||||||||  |||||| ||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  38208541 attggtccctgactctattagttgttctgcattttaaaccactaaagtaccaaataagatccaaaagacattatgtcattaatcactaaataatatccaa 38208442  T
Q  234 aagac 238  Q
     ||||    
T  38208441 gagac 38208437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 27134178 - 27134081
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||  |||||||||||||||||||||||| |   ||||||||||||| |||| |||||||||||  |||||||||||||||||||| |||||    
T  27134178 aaattggtctttgactctattaataactcaaaatggttcatgtctttgtcaaatgtttctcagattggtctctgactctattagttgttttgtatttt 27134081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 27133862 - 27133962
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||| |||  |||| || | ||||||||||||||  ||||||||||    
T  27133862 aaattgatccctgactttattaataactcaaaatggtctatgtctttgtcaaacgtttctcatgttggacactaactctattagttgtactgcattttaa 27133961  T
Q  171 g 171  Q
    |    
T  27133962 g 27133962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 33321361 - 33321264
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||  ||||||||||||||||||||||||  ||   ||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |||||    
T  33321361 aaattggtttctgactctattaataactcaaaatagtccacgtctttgtcaaacttttttcaaattggtcattgtctctattatttgttttgtatttt 33321264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 49784570 - 49784659
Alignment:
Q  77 gtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||||||||||||||||||||| | |  |||||||||||  |||| |||||||||||  |||||| ||||||||||||| |||||    
T  49784570 gtccctgactctattaataactcaaaatggtat--gtctttgtcaagtgtttctcagattggtccctgactcaattagttgttttgtatttt 49784659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 23329337 - 23329436
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| ||||| |||||||||||||||| ||| ||||| ||| ||| |||||||||||||  |||||||||||  | ||| |||||||||||||| |||||    
T  23329337 tcaatttggttcctgactctattaatacctcgaaatggtctctgtgtttgtcaaacgttactcagattggtctctaactttattagttgttttgtatttt 23329436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 34535622 - 34535535
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagtt 156  Q
    |||| ||||||||||||| ||||||||||||||||||||  || ||||| ||| | |||| |||||||||||  ||||||||||||||    
T  34535622 tcaatttggtccctgactttattaataactcaaaatgattcttatctttatcatatgtttctcagattggtcgctgactctattagtt 34535535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 38208302 - 38208396
Alignment:
Q  74 ttggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||| ||||||||||| ||||||||||||| | | | |||||||||||  ||| ||||||||||||||||| |||||| || ||||| |||||    
T  38208302 ttggtctctgactctattgataactcaaaatggtttatatctttgtcaaatatttctcagattggtcattgacactattaattattttgtatttt 38208396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 4067204 - 4067115
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgtttt 161  Q
    |||||||||  |||||||||||||||||||||||| ||   |||||||||||| |||| |||||||||||  ||||||| ||| |||||||    
T  4067204 aaattggtcattgactctattaataactcaaaatggtc-acgtctttgtcaaatgtttctcagattggtccatgactctgttaattgtttt 4067115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 2464237 - 2464189
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtcttt 117  Q
    |||||||||||| |||||||||||||||||||||||  || ||||||||    
T  2464237 tcaaattggtccatgactctattaataactcaaaatagtcattgtcttt 2464189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 2464100 - 2464159
Alignment:
Q  74 ttggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcag 133  Q
    |||||||| ||||| ||||||||||||||||||    |||||||||||||||||| ||||    
T  2464100 ttggtcccagactccattaataactcaaaatgactcatgtctttgtcaaacgtttctcag 2464159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 7481235 - 7481190
Alignment:
Q  83 gactctattaataactcaaaatgatctttgtctttgtcaaacgttt 128  Q
    |||||||||||||||| |||||| ||| | ||||||||||||||||    
T  7481235 gactctattaataacttaaaatggtctctatctttgtcaaacgttt 7481190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 38208438 - 38208377
Alignment:
Q  215 accactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaagaattaata 278  Q
    ||||||||||||||||||| |||||||||   ||| |||||||||  |||||||| ||||||||    
T  38208438 accactaaataatatccaagagacattgagtcatttacactcaaa--atacaaaataattaata 38208377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 69 - 337
Target Start/End: Original strand, 36937545 - 36937809
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||| |||||||||||||||||||||  || |||||||||||||||||| ||| | ||||||||  |||||||||||||||||||||||||||    
T  36937545 tcaaattggtctctgactctattaataactcaa--tggtctttgtctttgtcaaacatttcttagattggtacttgactctattagttgttttgcatttt 36937642  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaa 268  Q
    ||| ||  |||||| |||||||||| ||||||  |||||||||||||||||||||||||||| |||||| | |||   |||||||||||||  |||||||    
T  36937643 aagccatcaacgtaccaaataagatccaaaaggcattatgtcattaaccactaaataatatctaaaagatactgagtcattaacactcaaa--atacaaa 36937740  T
Q  269 agaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaa 337  Q
    | || ||||| || ||||||||| ||| | ||| |||| ||||| |||  ||  ||||| |||||||||    
T  36937741 acaactaatagagtcagggatcaatttgagaaacatttcacaaagacagagaccattttcagttattaa 36937809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 29469784 - 29469629
Alignment:
Q  130 tcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatat 229  Q
    |||||||||||  |||||||||||||||||||| |||||||| || ||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  29469784 tcagattggtccctgactctattagttgttttgtattttaagtcattaacgtatcaaataagatcgaaaagacattatgtcattaaccactaaataatat 29469685  T
Q  230 ccaaaagacattgaactattaacactcaaaatatacaaaagaattaataaagccaggg 287  Q
    ||||||||||||||   |||||||||||||  |||||||| |||||||| || |||||    
T  29469684 ccaaaagacattgagtcattaacactcaaa--atacaaaacaattaatagagtcaggg 29469629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 26407725 - 26407536
Alignment:
Q  73 attggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaagg 172  Q
    |||||||||||||||||||||||| |||||||| ||  |||||||||||| | |||||||  ||| || ||||||||||||||||||||| ||||||||     
T  26407725 attggtccctgactctattaataattcaaaatggtccctgtctttgtcaatcatttttcatgttgatccttgactctattagttgttttgtattttaagt 26407626  T
Q  173 cactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
     | ||||||| |||||||||| | ||||  ||||   |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  26407625 tattaacgtaccaaataagatccgaaaggcattagaccattaaccactaaataatattcaaaagatattgaaccattaacactcaaaata 26407536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 29167032 - 29166839
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||| || || ||||||||| ||||||||||||| ||| ||| |||||||||||||| |||||||| ||  | ||| ||||||  ||||| ||||||    
T  29167032 tcaaattagtaccggactctattgataactcaaaatggtctctgtttttgtcaaacgtttctcagattgatccctaactatattagccgttttacatttt 29166933  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    ||| || |||||||  ||||||||| ||||||  |||||  |||||||||||||||||||| ||||||||||| |   |||||||||| |||||    
T  29166932 aagtcattaacgtactaaataagatccaaaaggcattataccattaaccactaaataatattcaaaagacattaagtcattaacactcgaaata 29166839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 26407442 - 26407541
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||  | ||||||||||||||||||||||| ||  |||||||||||||| ||| |||||||||||  || |||||||||||| |||| |||||    
T  26407442 tcaaattggtttcagactctattaataactcaaaatggtccctgtctttgtcaaacttttctcagattggtccatgtctctattagttgatttgtatttt 26407541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 36937830 - 36937731
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||| ||||||| ||||||||||||||||| |||||| ||| ||||||||| ||| |||| ||| |||| ||  |||||||||||||||||||| |||||    
T  36937830 tcaatttggtccttgactctattaataactgaaaatggtctctgtctttgtgaaatgtttctcaaattgatccctgactctattagttgttttgtatttt 36937731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 29469556 - 29469657
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggt--cattgactctattagttgttttgcatt 166  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||| |||| ||||||| ||  |  ||||||||||| |||||||| |||    
T  29469556 tcaaattggtcattgactctattaataactcaaaatggtcgctgtctttgtcaaatgtttctcagattagtccccctgactctattaattgttttgtatt 29469655  T
Q  167 tt 168  Q
    ||    
T  29469656 tt 29469657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 18144034 - 18143965
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtc 140  Q
    ||||||||| ||||||||||||||||||||||||| |   ||| |||||||||||||| |||||||||||    
T  18144034 aaattggtctctgactctattaataactcaaaatggttcatgtttttgtcaaacgtttatcagattggtc 18143965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 25961135 - 25961215
Alignment:
Q  82 tgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttg 162  Q
    ||||||||||||||||| |||||| ||  ||| ||| |||||||||| ||| ||| ||| |||||||||||| ||||||||    
T  25961135 tgactctattaataacttaaaatggtccctgtttttatcaaacgtttctcatattagtctttgactctattaattgttttg 25961215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 25961275 - 25961223
Alignment:
Q  203 attatgtcattaaccactaaataatatccaaaagacattgaactattaacact 255  Q
    |||||||||||||||||||||||||||| |||| ||||||| | |||||||||    
T  25961275 attatgtcattaaccactaaataatatctaaaaaacattgagccattaacact 25961223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 29166748 - 29166843
Alignment:
Q  74 ttggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtt--tttcagattggtcattgactctattagttgttttgcattt 167  Q
    |||||||| ||||||||||||||||||||| | || |||||||||| ||| |||  | ||||||||| |  ||| |||||||||||||||| ||||    
T  29166748 ttggtccccgactctattaataactcaaaacggtccttgtctttgtgaaatgtttctctcagattgggccctgagtctattagttgttttgtattt 29166843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 26379647 - 26379700
Alignment:
Q  472 atattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagttaaa 525  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||| |||||    
T  26379647 atattatcttcatcatcatccaaaattaactcaagtataaacccaaaacttaaa 26379700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 30786479 - 30786444
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaat 104  Q
    |||||||| |||||||||||||||||||||||||||    
T  30786479 tcaaattgatccctgactctattaataactcaaaat 30786444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 30786351 - 30786432
Alignment:
Q  144 gactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatc 230  Q
    |||||||| |||||||||| |||||||| || |||| || |||| ||| ||||||     |||||||||||||| ||||||||||||    
T  30786351 gactctatgagttgttttgtattttaagtcattaacataccaaaaaagtttcaaa-----ttatgtcattaacctctaaataatatc 30786432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 516
Target Start/End: Original strand, 28239640 - 28239676
Alignment:
Q  480 ttcatcatcatacaaaattaacacaaatttaaaccca 516  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  28239640 ttcatcatcatccaaaattaaaacaaatttaaaccca 28239676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 10388265 - 10388452
Alignment:
Q  75 tggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggca 174  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||| ||| |||| ||| |||||||  |||||||||||| ||||||| |||||||| ||    
T  10388265 tggtctctgactctattaataactcaaaatggtctctgtctttgttaaatgtttctcatattggtctctgactctattaggtgttttgtattttaagtca 10388364  T
Q  175 ctaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
     ||| |||  ||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||   ||||| ||||||||||    
T  10388365 ttaaggtactaaataagatccaaaagacattatgccattaaccacaaaataatatccaaaagacattgagtcattaatactcaaaata 10388452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 69 - 355
Target Start/End: Original strand, 67380 - 67664
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||||||| ||||||||||| |||||| ||  ||| ||| |||||| ||| |||||||||||  | ||||| ||| |||||||| |||||    
T  67380 tcaaattggtccctgactatattaataacttaaaatggtccctgtttttatcaaacatttctcagattggtccctcactctgttaattgttttgtatttt 67479  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaa 268  Q
    ||  || ||| ||| |||||||||||||||||  |||| | ||| ||||||||||||||||||||||| |||||| | ||||||||| ||||||  ||||    
T  67480 aactcattaatgtaccaaataagattcaaaaggcattaggccatcaaccactaaataatatccaaaaggcattgatcaattaacactgaaaata--caaa 67577  T
Q  269 agaattaataaagccagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaacaaagtcagagaccaatt 355  Q
    | || ||||| || |||||| || | | |||||  | ||||||| ||   || |||||||||||||||| ||| |||||||||||||    
T  67578 acaactaatagagtcagggaccaatctgaaaaacgtatgacaaagacggagactattttgagttattaataaaatcagagaccaatt 67664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 30847668 - 30847858
Alignment:
Q  72 aattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaag 171  Q
    ||||||||  ||| ||||||||||| | |||||| ||  | |||||||||||||||| |||||||||||  | |||||||||||||||||| ||||||||    
T  30847668 aattggtctatgattctattaataatttaaaatggtccctatctttgtcaaacgtttctcagattggtctctaactctattagttgttttgtattttaag 30847767  T
Q  172 gcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
     || ||||||| ||||||| || ||||| |||||||||||||||||||||||||  |||||||| ||||||||  ||||||||| ||||||    
T  30847768 tcattaacgtaccaaataaaatacaaaaaatattatgtcattaaccactaaatagaatccaaaaaacattgaatcattaacacttaaaata 30847858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 67667 - 67568
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||| |||| | |||||||||||||||||  |||  |||||||||| ||||||||||||||||||  |||||||||||||||||||| |||||    
T  67667 tcaaattggtctctgattttattaataactcaaaatagtctccgtctttgtcatacgtttttcagattggtccctgactctattagttgttttgtatttt 67568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 30122871 - 30122751
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||| ||||| |           ||||||||||||||||||||||||||    
T  30122871 tcaaattggtccctaactttattaataactcaaaatggtctctgtctttgtcaaatgttttcc-----------tgactctattagttgttttgcatttt 30122783  T
Q  169 aaggcactaacgtatcaaataagattcaaaag 200  Q
    ||  || ||||||| |||||||||||||||||    
T  30122782 aaatcattaacgtaccaaataagattcaaaag 30122751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 3687665 - 3687799
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaa---tgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcat 165  Q
    |||||||| ||| ||||||| ||||||||||||||   || | |||||||||||||||||||| |||||||||||    |||||||||||||||||| |     
T  3687665 tcaaattgatccatgactctgttaataactcaaaaaaatgttatttgtctttgtcaaacgtttctcagattggtccccaactctattagttgttttgtaa 3687764  T
Q  166 tttaaggcactaacgtatcaaataagattcaaaag 200  Q
    |||||| || | ||||| ||||||| |||||||||    
T  3687765 tttaagtcattgacgtaccaaataaaattcaaaag 3687799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 82 - 262
Target Start/End: Complemental strand, 16435114 - 16434938
Alignment:
Q  82 tgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgt 181  Q
    |||||||||||||   |||||||  ||||||| ||||||||| |||||| |||||| |    |||| |||| ||| ||||  |||||||| || ||||||    
T  16435114 tgactctattaat---tcaaaatagtctttgtttttgtcaaatgttttttagattgatttccgactttatttgtt-ttttatattttaagtcattaacgt 16435019  T
Q  182 atcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaata 262  Q
    | ||||||||||  ||||   |||||   ||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  16435018 accaaataagatctaaaatgcattatactattaaccactaaataatatccaaaatacattgagctattaacactcaaaata 16434938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 16434845 - 16434943
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||  ||||||||||||||||| |||||| | | |||||||||||||  ||| ||||||||||| |||||| |||||||||||||| |||||    
T  16434845 tcaaattggtca-tgactctattaataactaaaaatggtatctgtctttgtcaaaaatttctcagattggtccttgactttattagttgttttgtatttt 16434943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 3687918 - 3687821
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||||||| | ||||| |||||||||||| ||| ||| |||||||||||||| ||||||||| |   |||| | |||||||||||| |||||    
T  3687918 aaattggtccctgagtttattagtaactcaaaatggtctctgtttttgtcaaacgtttctcagattggcccccgactttgttagttgttttgtatttt 3687821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 30122535 - 30122481
Alignment:
Q  189 aagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattga 243  Q
    ||||| ||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  30122535 aagatccaaaaggcattatgtcattaaccactaaataatatacaaaagacattga 30122481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 6714585 - 6714532
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaa 122  Q
    ||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||    
T  6714585 tcaaattggtctctgactttattaataattcaaaatggtctttgtctttgtcaa 6714532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 35072470 - 35072422
Alignment:
Q  80 cctgactctattaataactcaaaatgatctttgtctttgtcaaacgttt 128  Q
    |||||||||||||||| ||||||||||||| | ||||||||||| ||||    
T  35072470 cctgactctattaatagctcaaaatgatctctatctttgtcaaatgttt 35072422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 10388548 - 10388496
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtca 121  Q
    ||||||||||  || ||||||||||||| |||||||||||  |||||||||||    
T  10388548 tcaaattggtttctaactctattaataaatcaaaatgatccatgtctttgtca 10388496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 35072228 - 35072280
Alignment:
Q  81 ctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcag 133  Q
    |||||||||||||||| |||||| ||||| |||||||  ||||||||| ||||    
T  35072228 ctgactctattaataaatcaaaacgatctatgtctttaccaaacgtttctcag 35072280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 71 - 278
Target Start/End: Complemental strand, 20730653 - 20730451
Alignment:
Q  71 aaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcattttaa 170  Q
    |||||||||| ||||||||||||||||| ||||||      ||||||||||||||||||| |||||||||    |||||||||||||||||| |||||||    
T  20730653 aaattggtccatgactctattaataacttaaaatg------gtctttgtcaaacgttttttagattggtctcatactctattagttgttttgtattttaa 20730560  T
Q  171 ggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaa---aagacattgaactattaacactcaaaatatacaa 267  Q
    | || |||||||| ||||||||| || ||   |||||||||||||||||||||||||||||||   |||||||||||| ||| |||||||||  ||||||    
T  20730559 gccattaacgtattaaataagatccataatgcattatgtcattaaccactaaataatatccaaaagaagacattgaaccattgacactcaaa--atacaa 20730462  T
Q  268 aagaattaata 278  Q
    || ||||||||    
T  20730461 aacaattaata 20730451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 69 - 259
Target Start/End: Complemental strand, 36151059 - 36150869
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    |||||||||| ||| ||||||| |||||||||||||| ||| |||||||||||||||||| ||| |||| ||   |||||| |||||||||||| |||||    
T  36151059 tcaaattggttcctaactctatgaataactcaaaatggtctctgtctttgtcaaacgtttctcaaattgatccccgactctcttagttgttttgtatttt 36150960  T
Q  169 aaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaa 259  Q
    ||| || ||| ||| |||||||||| |||||   |||||| ||||||||||||||||||||||||||||||||||   | |||||||||||    
T  36150959 aagtcattaatgtaccaaataagatccaaaaagcattatgccattaaccactaaataatatccaaaagacattgagtcaataacactcaaa 36150869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 85 - 337
Target Start/End: Original strand, 13932619 - 13932866
Alignment:
Q  85 ctctattaataactcaaaatgatctttgtctttgtcaaacgtttttc--agattggtcattgactctattagttgttttgcattttaaggcactaacgta 182  Q
    ||||||||||||||||||||| |||||    ||||||||| |||||   ||||||||||| |||| |||||||||||||| |||||||| || || ||||    
T  13932619 ctctattaataactcaaaatggtcttt----ttgtcaaacattttttttagattggtcat-gactatattagttgttttgtattttaagtcattatcgta 13932713  T
Q  183 tcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattgaactattaacactcaaaatatacaaaagaattaataaagc 282  Q
     |||||||||||||||| ||||||||||||||||||||||||| |||  |||||| ||||| | ||||||||||||||||  ||||| || ||||| ||     
T  13932714 ccaaataagattcaaaatatattatgtcattaaccactaaatagtattaaaaagatattgagccattaacactcaaaata--caaaataactaatagagt 13932811  T
Q  283 cagggatcagtttaaaaaatatttgacaaatacattgattattttgagttattaa 337  Q
    |  |||||| | | | |||  ||||||||| |||||||  |||||||||||||||    
T  13932812 cgtggatcaatctgagaaacgtttgacaaagacattgaccattttgagttattaa 13932866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 252
Target Start/End: Original strand, 8999597 - 8999750
Alignment:
Q  100 aaaatgatctttgtctttgtcaaa-cgtttttcagattggtcattgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaa 198  Q
    |||||| ||| ||| ||||||||| ||||||| |||||||||   | ||||||||||||||||| |||| ||  || || |||| ||||||| || ||||    
T  8999597 aaaatggtctatgtttttgtcaaatcgttttttagattggtctccggctctattagttgttttgtatttcaaatcattaccgtaccaaataaaatccaaa 8999696  T
Q  199 agatattatgtcattaaccactaaataatatccaaaagacattgaactattaac 252  Q
    || ||||||  ||||||||| |||||||||||||||||||||||||| ||||||    
T  8999697 aggtattataacattaaccattaaataatatccaaaagacattgaaccattaac 8999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 13932873 - 13932788
Alignment:
Q  83 gactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||| |||||||| ||   ||||||||||||| ||||| |||||    
T  13932873 gactctattaataactcaaaatggtcaatgtctttgtcaaacgtttctcagattgatccacgactctattagttattttgtatttt 13932788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 17990784 - 17990843
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgttt 128  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  17990784 tcaatttggtccctgactctattaataactcaaaatggtctttgtttttgtcaaaagttt 17990843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 36150773 - 36150860
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtc-tttgtcaaacgtttttcagattggtcattgactctattagt 155  Q
    |||||||||||||| ||||||| |||||||||||||| |   |||| ||||||||| |||| ||||||| |||| || ||||||||||    
T  36150773 tcaaattggtccctaactctatgaataactcaaaatggttcatgtcttttgtcaaatgtttctcagatttgtcactggctctattagt 36150860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 22843783 - 22843837
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaa 123  Q
    |||| ||||||||| | ||||||||||| |||||||| ||| |||||||||||||    
T  22843783 tcaatttggtccctcattctattaataattcaaaatggtctctgtctttgtcaaa 22843837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 22843943 - 22843894
Alignment:
Q  83 gactctattaataactcaaaatgatctttgtctttgtcaaacgtttttca 132  Q
    |||||||||||||||| |||||| ||  ||||||||||||| ||||||||    
T  22843943 gactctattaataacttaaaatggtccatgtctttgtcaaatgtttttca 22843894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 70890 - 70791
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattggtcattgactctattagttgttttgcatttt 168  Q
    ||||||||||| ||||||||||||||| ||||||||| ||  |||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||    
T  70890 tcaaattggtctctgactctattaatagctcaaaatggtccatgtctttgtcaaacgtttctcagattggtctctgactctattagttgttttgtatttt 70791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 70629 - 70698
Alignment:
Q  69 tcaaattggtccctgactctattaataactcaaaatgatctttgtctttgtcaaacgtttttcagattgg 138  Q
    |||||||||||||| ||| ||||||||||| |||||||| | |||||||||||||||||| |||||||||    
T  70629 tcaaattggtccctcactttattaataacttaaaatgatttctgtctttgtcaaacgtttctcagattgg 70698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 8564 - 8664
Alignment:
Q  143 tgactctattagttgttttgcattttaaggcactaacgtatcaaataagattcaaaagatattatgtcattaaccactaaataatatccaaaagacattg 242  Q
    |||||||||||||||||||  |||||||  || ||| | | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8564 tgactctattagttgttttatattttaaatcattaaggcaccaaataatatccaaaagatattatgtcattaaccactaaataatatccaaaagacattg 8663  T
Q  243 a 243  Q
    |    
T  8664 a 8664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 525
Target Start/End: Original strand, 1854 - 1908
Alignment:
Q  468 caaaatattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagttaaa 525  Q
    ||||||||| |||||||||||   |||||||||||||||||||||| ||||| |||||    
T  1854 caaaatattttcttcatcatc---caaaattaacacaaatttaaactcaaaacttaaa 1908  T

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