View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_21 (Length: 371)
Name: NF19563_low_21
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 32704965 - 32704606
Alignment:
| Q |
1 |
gaaaaggaaagtaaatttactactgtttaagtaacaactattgaaacaatttcgcaggatgtgttgtttacggcaaagatggttctgaagaagtgtatga |
100 |
Q |
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| T |
32704965 |
gaaaaggaaagtaaatttaatactgtttaagtaacaactattgaaacaatttcgcaggatgtgttgtttacggcaaagatggttctgaagaagtgtatga |
32704866 |
T |
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| Q |
101 |
tggatgcataatggcagtacatgcacctgatgctttgagattattaggagatgaagcaacatatgatgagagaagaattattggtgcttttcaatatgca |
200 |
Q |
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| T |
32704865 |
tggatgcataatgtcagtacatgcacctgatgctttgagattattaggagatgaagcaacatatgatgagagaagaattattggtgcttttcaatatgca |
32704766 |
T |
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| Q |
201 |
tacaggtaaaaatccatattaatatgaagagagtttttgttgtctaagtccaaatgcataattattgattgatctgtattggcagtgatatttatcttca |
300 |
Q |
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| T |
32704765 |
tacaggtaaaaatccatattaatatgaagagag-ttttgttgtctaagtccaaatgcataattattgattgatctgtattggcagtgatatttatcttca |
32704667 |
T |
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| Q |
301 |
tcgtgataaaaatttaatgccgcaaaacccagcagcatggagtgcttggaattttcttgga |
361 |
Q |
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| T |
32704666 |
tcgtgataaaaatttaatgccgcaaaacccagcagcatggagtgcttggaattttcttgga |
32704606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 16808102 - 16808259
Alignment:
| Q |
54 |
gcaggatgtgttgtttacggcaaagatggttctgaagaagtgtatgatggatgcataatggcagtacatgcacctgatgctttgagattattaggagatg |
153 |
Q |
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| T |
16808102 |
gcaggatgtgttgtgttatgtaaagacggttccgaagaaatgtatgattcttgcataatagcagtacatgcccctgatgttctgaaaatattaggagatg |
16808201 |
T |
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| Q |
154 |
aagcaacatatgatgagagaagaattattggtgcttttcaatatgcatacaggtaaaa |
211 |
Q |
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| T |
16808202 |
aagcaacatcagatgaatgtagaatacttggtgcttttcaatatgtatattggtaaaa |
16808259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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