View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_22 (Length: 367)

Name: NF19563_low_22
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_22
NF19563_low_22
[»] chr8 (2 HSPs)
chr8 (88-352)||(26914837-26915101)
chr8 (13-75)||(26914757-26914819)
[»] chr5 (5 HSPs)
chr5 (101-352)||(21211116-21211367)
chr5 (186-248)||(21249121-21249183)
chr5 (22-66)||(7156000-7156044)
chr5 (22-66)||(43262845-43262889)
chr5 (22-66)||(13312519-13312563)
[»] scaffold0056 (1 HSPs)
scaffold0056 (105-352)||(63187-63434)
[»] chr4 (1 HSPs)
chr4 (22-66)||(19596933-19596977)
[»] chr1 (2 HSPs)
chr1 (22-73)||(13350896-13350947)
chr1 (24-73)||(34941713-34941762)
[»] chr6 (1 HSPs)
chr6 (22-66)||(3620904-3620948)
[»] chr3 (1 HSPs)
chr3 (22-66)||(31545446-31545490)
[»] chr2 (1 HSPs)
chr2 (22-66)||(30906196-30906240)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 88 - 352
Target Start/End: Original strand, 26914837 - 26915101
Alignment:
Q  88 ttcaagtagaagaagggaaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaat 187  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26914837 ttcaaatagaagaacggaaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaat 26914936  T
Q  188 ctgcccattccaatttgtgttcgtctgatacaacaaacatctgaccaaaaccttccatatctcctggtttctgagataatattttcttctcttccactgg 287  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26914937 ctgcccattccagtttgtgttcatctgatacaacaaacatctgaccgaaaccttccatatctcctggtttctgagataatattttcttctcttccactgg 26915036  T
Q  288 cagattgaagaaatcttggacaagttttttaaaattttccaccaataaaggattgactccatgat 352  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26915037 cagattgaagaagtcttggacaagttttttaaaattttccaccaataaaggattgactccgtgat 26915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 26914757 - 26914819
Alignment:
Q  13 aatatttctttaactgaaattttccaaagtagtacaaaaggatgtacacattaacgatgtcaa 75  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| ||||  || ||||||||    
T  26914757 aatatttgtttaactgaaattttccagagtagtacaaaaggatgtgcacagcaaggatgtcaa 26914819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 101 - 352
Target Start/End: Complemental strand, 21211367 - 21211116
Alignment:
Q  101 agggaaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaatctgcccattccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21211367 agggaaagaacctgaatggttggggaatactaggaaataattgtggatttctcatgtatgatggatgagtgataatgtggaataaatctgcccattccaa 21211268  T
Q  201 tttgtgttcgtctgatacaacaaacatctgaccaaaaccttccatatctcctggtttctgagataatattttcttctcttccactggcagattgaagaaa 300  Q
    |||||| || |||||||||||||||| ||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||| ||||||||||||||     
T  21211267 tttgtgatcctctgatacaacaaacaactgaccaaaaccttcgatatttcctggtttttgcgataatattttcttctcttccaccggcagattgaagaag 21211168  T
Q  301 tcttggacaagttttttaaaattttccaccaataaaggattgactccatgat 352  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  21211167 tcttgaacaagttttttaaaattttccaccaataaaggattgactccgtgat 21211116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 21249183 - 21249121
Alignment:
Q  186 atctgcccattccaatttgtgttcgtctgatacaacaaacatctgaccaaaaccttccatatc 248  Q
    |||||||||||| ||||| || || || || |||||||||||||||||||| |||||||||||    
T  21249183 atctgcccattctaatttttgatcatcagagacaacaaacatctgaccaaatccttccatatc 21249121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 7156044 - 7156000
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||    
T  7156044 ttaactgaaattttctaaagtggtacaaaaagatgtacacattaa 7156000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 43262845 - 43262889
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||||||||||||| |||||||||||||| || ||||||||||||    
T  43262845 ttaactgaaatttttcaaagtagtacaaaggggtgtacacattaa 43262889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 13312563 - 13312519
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||    
T  13312563 ttaattgaaattttcgaaaatagtacaaaagggtgtacacattaa 13312519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 105 - 352
Target Start/End: Original strand, 63187 - 63434
Alignment:
Q  105 aaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaatctgcccattccaatttg 204  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| |||||| |||||||||||||||||||||||| | ||||    
T  63187 aaagaacctgaatggttggggaatacttggaaataagtttggatttcttatatatgttggaagagtgacaatgtagaataaatctgcccattcaagtttg 63286  T
Q  205 tgttcgtctgatacaacaaacatctgaccaaaaccttccatatctcctggtttctgagataatattttcttctcttccactggcagattgaagaaatctt 304  Q
    ||||| |||||||||||||||||||||||||| || |||||||| || ||||| ||    || ||||||||||||||| | |  ||||||||||| ||||    
T  63287 tgttcttctgatacaacaaacatctgaccaaacccctccatatcaccaggtttttgcccaaaaattttcttctcttccgcagatagattgaagaactctt 63386  T
Q  305 ggacaagttttttaaaattttccaccaataaaggattgactccatgat 352  Q
    | ||| ||||||| |||||||| |||||| |  ||| |||||||||||    
T  63387 gaacatgttttttgaaattttcaaccaatgatagatcgactccatgat 63434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 19596933 - 19596977
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||||||||||||||||||   |||||||||||||||||||||||    
T  19596933 ttaactgaaattttccaaaagggtacaaaaggatgtacacattaa 19596977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 13350947 - 13350896
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaacgatgtc 73  Q
    ||||||||||||||| | ||| |||||||||| |||||||||||| ||||||    
T  13350947 ttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtc 13350896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 34941762 - 34941713
Alignment:
Q  24 aactgaaattttccaaagtagtacaaaaggatgtacacattaacgatgtc 73  Q
    |||||||||||| || ||| ||||||| ||||||||||||||| ||||||    
T  34941762 aactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtc 34941713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 3620904 - 3620948
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    ||||||||||||||| ||| |||||||||  ||||||||||||||    
T  3620904 ttaactgaaattttcgaaaatagtacaaagcgatgtacacattaa 3620948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 31545490 - 31545446
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    ||||||||||||||| | ||||||||||| |||| ||||||||||    
T  31545490 ttaactgaaattttcgagagtagtacaaagggatatacacattaa 31545446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 30906196 - 30906240
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||||||||||||| || ||| |||||||||| ||||||||||||    
T  30906196 ttaactgaaatttttcagagtggtacaaaagggtgtacacattaa 30906240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University